BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2532.p         (252 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0353 Non COG                                                       288   8e-78
PA0255 [S] COG3619 Predicted membrane protein Pae Pseudomonas ae...    52   1e-06
slr0142 [S] COG3619 Predicted membrane protein Syn Synechocystis       43   5e-04
SMa1297 [S] COG3619 Predicted membrane protein Sme Sinorhizobium...    40   0.005
BS_yoaK [S] COG3619 Predicted membrane protein Bsu Bacillus subt...    40   0.007

>RSp0353 Non COG
          Length = 247

 Score =  288 bits (737), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 165/249 (66%), Positives = 203/249 (81%), Gaps = 7/249 (2%)

Query: 1   MPINYLRRLTSPARTDLSNRHLGRSLAFIAGAVNAGGFLAVGQYTSHMSGIVSSLADNLV 60
           MPI YLRRLTSP RTD +NR LG+SLAF+AGA NAGGFLAV QYTSHMSGIVS++AD+LV
Sbjct: 1   MPIQYLRRLTSPERTDETNRRLGQSLAFVAGAANAGGFLAVRQYTSHMSGIVSAVADDLV 60

Query: 61  LGETLLLVAGASALLSFLLGAACSAVMINWARRRGLHSEYAMPLMLEAMLLLCFGILGSN 120
           LG+  L++AG ++LL+FL GAAC+AV++NW RRR   S +A+PL+LEA LLL FG++G++
Sbjct: 61  LGDVPLVLAGVASLLAFLGGAACTAVLVNWGRRRSTQSAFALPLLLEAALLLGFGLMGAS 120

Query: 121 LENHRLLFVPVTVALLCFVMGLQNAMISKISRSEIRTTHVTGLVTDIGIEIGKMCYWSLA 180
           L ++R++FVP TVALLCF+MGLQNA+I+KISR+EIRTTHVTGL TDIGIEIGK  YW+  
Sbjct: 121 LSHYRVVFVPATVALLCFMMGLQNAIITKISRAEIRTTHVTGLTTDIGIEIGKALYWN-- 178

Query: 181 PYQPGESSLSEDPVPGARRKFLLLASLLLMFFLGGVTGALGFKLVGFVATMPLAAALFLL 240
               G   L    V   R K  LL+SLL MFFLGGVTGA+GFK VG+VAT+PLA+ L  L
Sbjct: 179 ---RGHRHLHA--VVADRSKLRLLSSLLGMFFLGGVTGAMGFKYVGYVATIPLASILMAL 233

Query: 241 ALVPMMDDL 249
           A+VP+MDDL
Sbjct: 234 AVVPVMDDL 242


>PA0255 [S] COG3619 Predicted membrane protein Pae Pseudomonas aeruginosa
          Length = 228

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 78/148 (52%), Gaps = 12/148 (8%)

Query: 26  LAFIAGAVNAGGFLAVGQYTSHMSGIVSSLADNLVLGETLLLVAGASALLSFLLGAACSA 85
           L+ +AG  +A GFLA G + S MSG  + LA +L  G+   LV  + AL SF++G A   
Sbjct: 26  LSVLAGMTDAIGFLATGDFVSFMSGNTTRLAVSLGEGDFGGLVRLSVALASFVVGNALGV 85

Query: 86  VMINWARRRGLHSEYAMPLMLEAMLLLCFGILGSNLENHRLLFVPVTVALLCFVMGLQNA 145
           ++  ++ RR      A P+++   +LL    +     N     VP  VA +   MG+ NA
Sbjct: 86  ILARFSGRR------AAPILVCCAMLLALSAVWPFDWN-----VPALVAAI-LAMGMLNA 133

Query: 146 MISKISRSEIRTTHVTGLVTDIGIEIGK 173
           ++ +++   I  T+VTG ++  G  +G+
Sbjct: 134 VVEQVNGLPIGLTYVTGALSRFGRGLGR 161


>slr0142 [S] COG3619 Predicted membrane protein Syn Synechocystis
          Length = 244

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 42/231 (18%)

Query: 29  IAGAVNAGGFLAV-GQYTSHMSGIVSSLADNLVLGETLLLVAGASALLS-------FLLG 80
           +AG ++A  FL + G +TSH++G       NLV+  T ++  G  AL         F+  
Sbjct: 18  VAGFIDAASFLGLNGLFTSHITG-------NLVIAATEIIGVGGEALWVRIAVIPVFMFA 70

Query: 81  AACSAVMINWARRRGLHSEYAMPLMLEAMLLLCFGILGSNLE-------NHRLLFVPVTV 133
              + V+   ARR  L   Y + L  E ++LL F I    L+       N+  LFV  T 
Sbjct: 71  VLLTTVL---ARRHQLRLAYLISL--ETLVLLLFTISAVALDPPHHKSVNNLPLFV--TG 123

Query: 134 ALLCFVMGLQNAMISK----ISRSEIRTTHVTGLVTDIGIEIGKMCYWSLAPYQPGESSL 189
           +L  F MG+QNA++ +    I+ +   T ++T    D+ +      +  L         L
Sbjct: 124 SLGVFSMGMQNALMRESLGHIAPTTAMTNNLTQFTMDLALTSSLQSHAQL--------QL 175

Query: 190 SEDPVPGARRKFLLLASLLLMFFLGGVTGALGFKLVGFVA-TMPLAAALFL 239
           S   +  +R + +   S LL F +G + G +     G ++   PL   +FL
Sbjct: 176 SLQDLDASRTRLIKFGSSLLGFTVGAICGGVLTAKFGLISLCFPLTLMIFL 226


>SMa1297 [S] COG3619 Predicted membrane protein Sme Sinorhizobium meliloti
          Length = 195

 Score = 40.0 bits (92), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 21/143 (14%)

Query: 34  NAGGFLAVGQYTSHMSGIVSSLADNLVLGET---LLLVAGASALLSFLLGAACSAVMINW 90
           +A G +++G + S MSG  +  +  LV G+    LLL+ G   L+SF+LG A + VMI+ 
Sbjct: 3   DAIGLMSIGDFVSFMSGNTTRASVALVQGDAAQGLLLIGG---LVSFVLGNA-AGVMIS- 57

Query: 91  ARRRGLHSEYAMPLMLEAMLLLCFGILGSNLENHRLLFVPVTVALLCFVMGLQNAMISKI 150
                +       L+  + LL C  +     E   L FV      L F MG  NA + +I
Sbjct: 58  -----IRFRPQAALLFVSALLACAALQEGQPE---LRFVS-----LIFAMGAVNASVEQI 104

Query: 151 SRSEIRTTHVTGLVTDIGIEIGK 173
               +  T+VTG ++  G  +G+
Sbjct: 105 EGLPVGLTYVTGALSRFGRGLGR 127


>BS_yoaK [S] COG3619 Predicted membrane protein Bsu Bacillus subtilis
          Length = 225

 Score = 39.7 bits (91), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 12/142 (8%)

Query: 26  LAFIAGAVNAGGFLAVGQ-YTSHMSGIVSSLADNLVLGETLLLVAGAS--ALLSFLLGAA 82
           L   AG V+  G+L++G  +T++M+G +  L   L +G+++ +    S  AL+ F+ G  
Sbjct: 14  LCLTAGIVDVIGYLSLGHVFTANMTGNIVLL--GLAIGKSIQVTVFNSLTALIGFICGVI 71

Query: 83  CSAVMINWARRRGLHSEYAMPLMLEAMLLLCFGILGSNLENHRLLFVPV--TVALLCFVM 140
            + +M+  A      S     L LEA +L  F    + L  +R  FVPV   + L+   M
Sbjct: 72  IATLMVGKAENTLWPSAVTKALALEAFILFVF----ACLSFYRA-FVPVHILIILMSISM 126

Query: 141 GLQNAMISKISRSEIRTTHVTG 162
           G+Q     K+  + I +T +TG
Sbjct: 127 GIQTTAAKKLGIAGISSTVLTG 148