BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2528.p         (73 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0355 [R] COG0693 Putative intracellular protease/amidase Pae P...    41   6e-04
BS_yraA [R] COG0693 Putative intracellular protease/amidase Bsu ...    27   8.0  

>PA0355 [R] COG0693 Putative intracellular protease/amidase Pae
          Pseudomonas aeruginosa
          Length = 179

 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 2  MSNRYHQLKVAVLVTDGFEQAELLEPKK----AAATSRACRKKA--VR----HQPRPATK 51
          M+   H   VA LVTDGFEQ EL  PKK    A AT R    KA  VR    HQP  A +
Sbjct: 1  MTQSLHGKVVAALVTDGFEQVELTGPKKALEDAGATVRILSDKAGEVRGWNHHQPAEAFR 60

Query: 52 MK 53
          + 
Sbjct: 61 VD 62


>BS_yraA [R] COG0693 Putative intracellular protease/amidase Bsu Bacillus
          subtilis
          Length = 154

 Score = 27.3 bits (59), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 10 KVAVLVTDGFEQAELLEPKKA 30
          K+AVLVTD FE  E   P KA
Sbjct: 4  KIAVLVTDQFEDIEYTSPVKA 24