BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2522.p (336 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z2771 [L] COG0322 Nuclease subunit of the excinuclease complex E... 194 3e-49 ECs2447 [L] COG0322 Nuclease subunit of the excinuclease complex... 194 3e-49 ydjQ [L] COG0322 Nuclease subunit of the excinuclease complex Ec... 194 3e-49 STM1309 [L] COG0322 Nuclease subunit of the excinuclease complex... 180 5e-45 CPn0940 [L] COG0322 Nuclease subunit of the excinuclease complex... 77 6e-14 >Z2771 [L] COG0322 Nuclease subunit of the excinuclease complex EcZ Escherichia coli O157:H7 EDL933 Length = 295 Score = 194 bits (492), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 115/289 (39%), Positives = 175/289 (60%), Gaps = 10/289 (3%) Query: 43 FNAPQPAAHRAATFSYPLHIDRASIDALPAACGVYILRG-VDDVPLYVGRSVNLRSRVLA 101 +P+ AA + YP H+ R+ ++ LP GVY+ G D +PLY+G+SVN+RSRVL+ Sbjct: 5 LTSPRLEFEAAAIYEYPEHL-RSFLNDLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLS 63 Query: 102 QLHHHEDQFLIARTRRIECRRTAGELGAALLENCLLRDLRPAHNKKPRSKRGLFTLRISP 161 L ++ ++ ++RRI TAGE+GA LLE L+++ +P NK+ R R L L+++ Sbjct: 64 HLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNE 123 Query: 162 QGQPLVAELTERESSRAENLFGLYTSQRAAQEALHKLVERHCLCSIVTGLEQASSPGMAC 221 + +V E + SRA NLFGL+ ++RAA +AL + + LC + GLE S G AC Sbjct: 124 KRVDVVYA-KEVDFSRAPNLFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSR-GRAC 181 Query: 222 FGRQIRRCRGACTGEESHEQHQQRLLQALQDLRILPWPYAGPMALVEQGDGWQQVHVIDH 281 F ++RC GAC G+ESHE+H RL Q+L+ LR++ WP+ G +AL EQ Q H+I + Sbjct: 182 FRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVALKEQHPEMTQYHIIQN 241 Query: 282 WRYLGSLD--RDNRQLASRPAASLKGFDLESYKLVIQPYLLGQLELRPL 328 W +LG+++ + L PA GFD + YK++ +P L G E+ L Sbjct: 242 WLWLGAVNSLEEATTLIRTPA----GFDHDGYKILCKPLLSGNYEITEL 286 >ECs2447 [L] COG0322 Nuclease subunit of the excinuclease complex Ecs Escherichia coli O157:H7 Length = 295 Score = 194 bits (492), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 115/289 (39%), Positives = 175/289 (60%), Gaps = 10/289 (3%) Query: 43 FNAPQPAAHRAATFSYPLHIDRASIDALPAACGVYILRG-VDDVPLYVGRSVNLRSRVLA 101 +P+ AA + YP H+ R+ ++ LP GVY+ G D +PLY+G+SVN+RSRVL+ Sbjct: 5 LTSPRLEFEAAAIYEYPEHL-RSFLNDLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLS 63 Query: 102 QLHHHEDQFLIARTRRIECRRTAGELGAALLENCLLRDLRPAHNKKPRSKRGLFTLRISP 161 L ++ ++ ++RRI TAGE+GA LLE L+++ +P NK+ R R L L+++ Sbjct: 64 HLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNE 123 Query: 162 QGQPLVAELTERESSRAENLFGLYTSQRAAQEALHKLVERHCLCSIVTGLEQASSPGMAC 221 + +V E + SRA NLFGL+ ++RAA +AL + + LC + GLE S G AC Sbjct: 124 KRVDVVYA-KEVDFSRAPNLFGLFANRRAALQALQSIADEQKLCYGLLGLEPLSR-GRAC 181 Query: 222 FGRQIRRCRGACTGEESHEQHQQRLLQALQDLRILPWPYAGPMALVEQGDGWQQVHVIDH 281 F ++RC GAC G+ESHE+H RL Q+L+ LR++ WP+ G +AL EQ Q H+I + Sbjct: 182 FRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVALKEQHPEMTQYHIIQN 241 Query: 282 WRYLGSLD--RDNRQLASRPAASLKGFDLESYKLVIQPYLLGQLELRPL 328 W +LG+++ + L PA GFD + YK++ +P L G E+ L Sbjct: 242 WLWLGAVNSLEEATTLIRTPA----GFDHDGYKILCKPLLSGNYEITEL 286 >ydjQ [L] COG0322 Nuclease subunit of the excinuclease complex Eco Escherichia coli K12 Length = 295 Score = 194 bits (492), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 115/289 (39%), Positives = 175/289 (60%), Gaps = 10/289 (3%) Query: 43 FNAPQPAAHRAATFSYPLHIDRASIDALPAACGVYILRG-VDDVPLYVGRSVNLRSRVLA 101 +P+ AA + YP H+ R+ ++ LP GVY+ G D +PLY+G+SVN+RSRVL+ Sbjct: 5 LTSPRLEFEAAAIYEYPEHL-RSFLNDLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLS 63 Query: 102 QLHHHEDQFLIARTRRIECRRTAGELGAALLENCLLRDLRPAHNKKPRSKRGLFTLRISP 161 L ++ ++ ++RRI TAGE+GA LLE L+++ +P NK+ R R L L+++ Sbjct: 64 HLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNE 123 Query: 162 QGQPLVAELTERESSRAENLFGLYTSQRAAQEALHKLVERHCLCSIVTGLEQASSPGMAC 221 + +V E + SRA NLFGL+ ++RAA +AL + + LC + GLE S G AC Sbjct: 124 KRVDVVYA-KEVDFSRAPNLFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSR-GRAC 181 Query: 222 FGRQIRRCRGACTGEESHEQHQQRLLQALQDLRILPWPYAGPMALVEQGDGWQQVHVIDH 281 F ++RC GAC G+ESHE+H RL Q+L+ LR++ WP+ G +AL EQ Q H+I + Sbjct: 182 FRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVALKEQHPEMTQYHIIQN 241 Query: 282 WRYLGSLD--RDNRQLASRPAASLKGFDLESYKLVIQPYLLGQLELRPL 328 W +LG+++ + L PA GFD + YK++ +P L G E+ L Sbjct: 242 WLWLGAVNSLEEATTLIRTPA----GFDHDGYKILCKPLLSGNYEITEL 286 >STM1309 [L] COG0322 Nuclease subunit of the excinuclease complex Sty Salmonella typhimurium LT2 Length = 302 Score = 180 bits (456), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 112/286 (39%), Positives = 169/286 (59%), Gaps = 12/286 (4%) Query: 44 NAPQPAAHRAATFSYPLHIDRASIDALPAACGVYILRG-VDDVPLYVGRSVNLRSRVLAQ 102 +AP+ AA + YP H+ R + PA GVYI D +PLY+G+SVN+RSRVL+ Sbjct: 15 SAPRLEFEAAAIYEYPEHL-RPFLSEAPALPGVYIFHSESDTLPLYIGKSVNIRSRVLSH 73 Query: 103 LHHHEDQFLIARTRRIECRRTAGELGAALLENCLLRDLRPAHNKKPRSKRGLFTLRISPQ 162 L ++ ++ + RRI TAGE+GA LLE L+++ +P NK+ R R L +L++S Q Sbjct: 74 LRTPDEATMLRQARRISWICTAGEMGALLLEARLIKEQQPLFNKRLRRNRQLCSLQLSEQ 133 Query: 163 GQPLVAELTERESSRAENLFGLYTSQRAAQEALHKLVERHCLCSIVTGLEQASSPGMACF 222 +V+ + + S NLFGL+ ++RAA ++L L + LC + GLE S G ACF Sbjct: 134 KIEVVSARSV-DFSHEPNLFGLFANRRAALQSLQNLADEQKLCYGLLGLEPVSR-GRACF 191 Query: 223 GRQIRRCRGACTGEESHEQHQQRLLQALQDLRILPWPYAGPMALVEQGDGWQQVHVIDHW 282 ++RC GAC G+E+ + H RL +L+ LR++ WP+ G +AL E Q H+I++W Sbjct: 192 RFALKRCAGACCGQETPQAHFLRLQASLERLRVVCWPWKGAIALKESRPQMTQFHIINNW 251 Query: 283 RYLG---SLDRDNRQLASRPAASLKGFDLESYKLVIQPYLLGQLEL 325 +LG SLD + L PA GFD + YK++ +P + GQ E+ Sbjct: 252 LWLGAVPSLD-EAATLVRTPA----GFDQDGYKILCKPLMSGQYEI 292 >CPn0940 [L] COG0322 Nuclease subunit of the excinuclease complex Cpn Chlamydophila pneumoniae CWL029 Length = 603 Score = 77.0 bits (188), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 100/208 (48%), Gaps = 20/208 (9%) Query: 60 LHIDRASIDALPAACGVYILRGVDDVPLYVGRSVNLRSRVLAQLHHHEDQ-----FLIAR 114 + I+ S+ +P++ GVY+++ V D LY+G++ NL++R+ + H D FL+ + Sbjct: 1 MRIEDFSLKLIPSSPGVYLMKDVHDQVLYIGKAKNLKNRLASYFHEKGDSRERIPFLMKK 60 Query: 115 TRRIECRRTAGELGAALLENCLLRDLRPAHNKKPRSKRGLFTLRIS-PQGQPLVAELTER 173 T IE + E A LLEN L++ P +N + + F L IS P V + + Sbjct: 61 TASIETIVVSNETEALLLENNLIKQHHPKYNVLLKDDKTFFCLAISLSHSWPKVEAIRTK 120 Query: 174 --ESSRAENLFGLYTSQRAAQEALHKLVERHCLCSIVTGLEQASSPGMA-----CFGRQI 226 SS+ + +FG Y S EA H L+E + S L S A C + Sbjct: 121 AITSSQRQLIFGPYVS----AEACHTLLE---VISQWFPLRTCSDREFALRKRPCILYDM 173 Query: 227 RRCRGACTGEESHEQHQQRLLQALQDLR 254 +RC C G + E++Q L +A+ L+ Sbjct: 174 KRCLAPCVGYCTPEEYQGTLDKAILFLK 201