BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2508.p (279 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA5438 [K] COG1737 Transcriptional regulators Pae Pseudomonas ae... 161 2e-39 VC1148 [K] COG1737 Transcriptional regulators Vch Vibrio cholerae 159 1e-38 PA3184 [K] COG1737 Transcriptional regulators Pae Pseudomonas ae... 154 2e-37 NMB1389 [K] COG1737 Transcriptional regulators Nme Neisseria men... 150 4e-36 NMA1605 [K] COG1737 Transcriptional regulators NmA Neisseria men... 150 4e-36 >PA5438 [K] COG1737 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 293 Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 92/268 (34%), Positives = 147/268 (54%) Query: 4 SLLQQIVREQEEMKPAELRIAHFVSQAPGEVIHMSMASLAERCAVSDPTIVRFCRRFGFN 63 +LLQ I + +++++ +EL++A V P V+H SMA LA VS+PTIVRFCR G + Sbjct: 2 NLLQHIAQSRQQLRKSELKVADHVLNDPASVMHSSMAELAHGVGVSEPTIVRFCRAIGCS 61 Query: 64 GYQEFKLNLAQSLVPAAPFVYEQITRDDDIDTIVRKTCRNSLSAIQRALDDLVPQQIEQA 123 G+Q+ KL LAQSL A F I D + K +L ++ + L +E+A Sbjct: 62 GFQDLKLKLAQSLAAGASFGQFSIHESDSVADFSLKIFDTTLHSLMEVREHLDTHALERA 121 Query: 124 AALLHSATWIGIYASGISEITALDAEHKFQRLGLRCAAVMEEKKQWMHAEKSRPNEVALI 183 A + A + Y G S A DA+HKF RL L AA + Q M A +P++VA+ Sbjct: 122 IAAIAHAQRVEFYGFGASGAVASDAQHKFFRLLLSAAAYSDPHMQAMSAVTLKPSDVAIC 181 Query: 184 FSQSGHTKRMVELAMAARAGGARVVAVTAADSPLAQVTDALIAVLPYDQTEFMTPLASRL 243 SQSG +K ++ A R GA ++ + + +PLA + +A+ ++ T+ TPL SR+ Sbjct: 182 ISQSGRSKDLLITANLVREAGATLITLCPSQTPLADLATVNLAIDVHEDTDIYTPLTSRI 241 Query: 244 NHHLVVNMLVTAIAVASNSEFPDQLPAL 271 H +V+++L +A+A + + L ++ Sbjct: 242 AHLVVIDVLAMGVAMARGPDLVNHLKSV 269 >VC1148 [K] COG1737 Transcriptional regulators Vch Vibrio cholerae Length = 284 Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 90/272 (33%), Positives = 142/272 (52%) Query: 6 LQQIVREQEEMKPAELRIAHFVSQAPGEVIHMSMASLAERCAVSDPTIVRFCRRFGFNGY 65 L++I + E +E ++A + +P IH S+A+LA+ VS+PT+ RFCRR G+ Sbjct: 4 LEKIQKNLENFSKSERKVAEVIMASPQTAIHSSIATLAKMADVSEPTVNRFCRRLDTKGF 63 Query: 66 QEFKLNLAQSLVPAAPFVYEQITRDDDIDTIVRKTCRNSLSAIQRALDDLVPQQIEQAAA 125 +FKL+LAQSL P+V + DD D K ++++ + A + L P QI +A Sbjct: 64 PDFKLHLAQSLANGTPYVNRNVEEDDGPDAYTHKIFESTMACLDVAKNSLDPVQINRAVD 123 Query: 126 LLHSATWIGIYASGISEITALDAEHKFQRLGLRCAAVMEEKKQWMHAEKSRPNEVALIFS 185 LL A I + G S A DA++KF R + + + Q M N+V ++ S Sbjct: 124 LLTQAKRISFFGLGASSAVARDAQNKFIRFNIPISCFEDIVMQRMSCINCTDNDVIVLIS 183 Query: 186 QSGHTKRMVELAMAARAGGARVVAVTAADSPLAQVTDALIAVLPYDQTEFMTPLASRLNH 245 +G TK VE+A AR GA V+A+TA DSPL + + I + + T+ P+ASR+ Sbjct: 184 HTGRTKSQVEIANLARENGATVIAITAKDSPLDKASSLSICLDVPEDTDVYMPMASRVVQ 243 Query: 246 HLVVNMLVTAIAVASNSEFPDQLPALDSWMTD 277 V+++L T + S F + L + + D Sbjct: 244 MTVIDVLATGFTLRRGSGFRENLKRVKEVLKD 275 >PA3184 [K] COG1737 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 285 Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/267 (35%), Positives = 150/267 (56%), Gaps = 2/267 (0%) Query: 3 NSLLQQIVREQEEMKPAELRIAHFVSQAPGEVIHMSMASLAERCAVSDPTIVRFCRRFGF 62 +LL+QI +E+ AE ++A + Q P + S+A+LA+ AVS+PT+ RFCR FG Sbjct: 2 KNLLEQIQSRLDELNKAERKVAEVILQNPQQATRFSIAALAQAAAVSEPTVNRFCRSFGM 61 Query: 63 NGYQEFKLNLAQSLVPAAPFVYEQITRDDDIDTIVRKTCRNSLSAIQRALDDLVPQQIEQ 122 +GY E K+ LAQSL A FV + + DD + RK N+++++ A L P+ I++ Sbjct: 62 SGYPELKIQLAQSLASGAAFVTQAVAEDDGPEAYTRKIFSNTIASLDSAHKLLDPRVIDR 121 Query: 123 AAALLHSATWIGIYASGISEITALDAEHKFQRLGLRCAAVMEEKKQWMHAEKSRPNEVAL 182 A LL A I + G S ALDA+HKF R L +A + Q M A + ++ + Sbjct: 122 AVDLLIQARQIHFFGLGASASVALDAQHKFFRFNLAVSAQADVLMQRMIASVAHTGDLFV 181 Query: 183 IFSQSGHTKRMVELAMAARAGGARVVAVTAADSPLAQVTDALIAV-LPYDQTEFMTPLAS 241 + S +G T+ +VE+A AR GA V+ +TAA SPLA+ + + + LP D T+ P+ S Sbjct: 182 VISYTGRTRELVEVAHLARENGASVLGLTAAGSPLARASTLCLDIPLPED-TDIYMPMTS 240 Query: 242 RLNHHLVVNMLVTAIAVASNSEFPDQL 268 R+ V+++L T + + +F L Sbjct: 241 RIVQLTVLDVLATGVTLRRGVDFQPHL 267 >NMB1389 [K] COG1737 Transcriptional regulators Nme Neisseria meningitidis MC58 Length = 282 Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 138/255 (54%), Gaps = 1/255 (0%) Query: 5 LLQQIVREQEEMKPAELRIAHFVSQAPGEVIHMSMASLAERCAVSDPTIVRFCRRFGFNG 64 +L +I + AE ++A P +H ++A +AER +VS PT++RFCR G+ G Sbjct: 1 MLSKISESLANLSGAERKVAECALAEPKWFVHAAVAEIAERASVSQPTVIRFCRSLGYKG 60 Query: 65 YQEFKLNLAQSLV-PAAPFVYEQITRDDDIDTIVRKTCRNSLSAIQRALDDLVPQQIEQA 123 EFKL L+ S+ P+V+E++ DDD+ ++V K N+ +++ L ++E A Sbjct: 61 LPEFKLALSASIGHEGMPYVHEELNADDDMASVVEKVLGNAAASLLGERRFLKESELENA 120 Query: 124 AALLHSATWIGIYASGISEITALDAEHKFQRLGLRCAAVMEEKKQWMHAEKSRPNEVALI 183 A L A + Y G S I A DA+HKF R G+ A ++ Q M A +V + Sbjct: 121 IATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSDQDVLVA 180 Query: 184 FSQSGHTKRMVELAMAARAGGARVVAVTAADSPLAQVTDALIAVLPYDQTEFMTPLASRL 243 S +G + +++ A+ GA V+A+T DSPLAQ+ D +++V + E TP+ SRL Sbjct: 181 ISNTGSSIELLDAVSIAKENGASVIALTRNDSPLAQLADCVLSVATQENAELYTPMVSRL 240 Query: 244 NHHLVVNMLVTAIAV 258 V+++L +A+ Sbjct: 241 LQLAVIDILAIGLAL 255 >NMA1605 [K] COG1737 Transcriptional regulators NmA Neisseria meningitidis Z2491 Length = 282 Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 84/255 (32%), Positives = 138/255 (54%), Gaps = 1/255 (0%) Query: 5 LLQQIVREQEEMKPAELRIAHFVSQAPGEVIHMSMASLAERCAVSDPTIVRFCRRFGFNG 64 +L +I + AE ++A P +H ++A +AER +VS PT++RFCR G+ G Sbjct: 1 MLSKISESLANLSGAERKVAECALAEPKWFVHAAVAEIAERASVSQPTVIRFCRSLGYKG 60 Query: 65 YQEFKLNLAQSLV-PAAPFVYEQITRDDDIDTIVRKTCRNSLSAIQRALDDLVPQQIEQA 123 EFKL L+ S+ P+V+E++ DDD+ ++V K N+ +++ L ++E A Sbjct: 61 LPEFKLALSASIGHEGMPYVHEELNADDDMASVVEKVLGNAAASLLGERRFLKESELENA 120 Query: 124 AALLHSATWIGIYASGISEITALDAEHKFQRLGLRCAAVMEEKKQWMHAEKSRPNEVALI 183 A L A + Y G S I A DA+HKF R G+ A ++ Q M A +V + Sbjct: 121 IATLMHARRVEFYGVGNSGIVAQDAQHKFFRFGMSTVAYVDTHTQLMAASVLSDQDVLVA 180 Query: 184 FSQSGHTKRMVELAMAARAGGARVVAVTAADSPLAQVTDALIAVLPYDQTEFMTPLASRL 243 S +G + +++ A+ GA V+A+T DSPLAQ+ D +++V + E TP+ SRL Sbjct: 181 ISNTGSSIELLDAVSIAKENGASVIALTRNDSPLAQLADCVLSVATQENAELYTPMVSRL 240 Query: 244 NHHLVVNMLVTAIAV 258 V+++L +A+ Sbjct: 241 LQLAVIDILAIGLAL 255