BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2500.p (240 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas ae... 381 e-106 VC1335 [K] COG1802 Transcriptional regulators Vch Vibrio cholerae 215 7e-56 BMEII0281 [K] COG1802 Transcriptional regulators Bme Brucella me... 111 2e-24 mll6988 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 94 3e-19 SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium... 91 3e-18 >PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 240 Score = 381 bits (978), Expect = e-106, Method: Compositional matrix adjust. Identities = 187/219 (85%), Positives = 201/219 (91%) Query: 7 LSGAEREGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQ 66 L A +GETLSEHVFRKIQSAIV GEIAPGSKISEPELARTYGISRGPLREAIHRLEG Sbjct: 8 LEIAHDDGETLSEHVFRKIQSAIVSGEIAPGSKISEPELARTYGISRGPLREAIHRLEGL 67 Query: 67 NLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEK 126 LLVRVPHVGARVVSL+ L+EL++IRESLEGMACRLAA+RMS+AE+DELRRVLDTHE+ Sbjct: 68 RLLVRVPHVGARVVSLSHAELIELYEIRESLEGMACRLAAERMSQAEIDELRRVLDTHER 127 Query: 127 DEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPNRPRQ 186 DEAFQAGRGYYQQEGDYDFHY+IIQ SGN LTR+LCGELYQL RMYRIQYS TPNRPRQ Sbjct: 128 DEAFQAGRGYYQQEGDYDFHYRIIQGSGNATLTRMLCGELYQLVRMYRIQYSTTPNRPRQ 187 Query: 187 AFAEHHRILDALADGDGELADLLMRRHIGASRRNIEHQI 225 AFAEHHRILDA+AD DGELA+LLMRRHI ASRRNIE Q+ Sbjct: 188 AFAEHHRILDAIADRDGELAELLMRRHISASRRNIERQL 226 >VC1335 [K] COG1802 Transcriptional regulators Vch Vibrio cholerae Length = 235 Score = 215 bits (547), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 115/224 (51%), Positives = 153/224 (68%), Gaps = 1/224 (0%) Query: 2 SELLALSGAEREGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIH 61 S L+ + E+E T SE++ + AIV+G++APGSKISEPELA+ + +SRGPLREA+ Sbjct: 5 SPLVRQASTEKES-TKSENLTEYLIEAIVEGQLAPGSKISEPELAKQFQVSRGPLREALM 63 Query: 62 RLEGQNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVL 121 R+EG L+ R+PH+GARV+ L+ LVEL+ +RE+LEGMA RLAA+ ++ EL L +L Sbjct: 64 RVEGLGLIERIPHIGARVIQLSPTKLVELYAVREALEGMAARLAARNITEIELAGLESLL 123 Query: 122 DTHEKDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATP 181 TH G Y+ Q+GD+DFHY+IIQA NQ L +LC ELY L RMYR Q + Sbjct: 124 STHSTHIDQVEGASYFHQQGDFDFHYRIIQACRNQQLIGLLCDELYHLLRMYRYQSPRSH 183 Query: 182 NRPRQAFAEHHRILDALADGDGELADLLMRRHIGASRRNIEHQI 225 +RP +A EH IL A+ D ELA++LMRRHI SR+ IE QI Sbjct: 184 SRPVEALEEHKFILRAIRQRDEELAEMLMRRHISRSRQLIEQQI 227 >BMEII0281 [K] COG1802 Transcriptional regulators Bme Brucella melitensis Length = 238 Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/226 (33%), Positives = 120/226 (53%), Gaps = 4/226 (1%) Query: 3 ELLALSGAEREGET-LSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIH 61 E LS E +T L + V ++ I G+ APG+ + + +A +GISR PLREA+ Sbjct: 7 EAFLLSAYEWRSQTRLLDEVAEALRERIYAGDYAPGAILRQEHIATEFGISRTPLREALR 66 Query: 62 RLEGQNLLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVL 121 LE L++ +P G RV S L L++ + +RE L+G+A R AA+R S A++ +LR + Sbjct: 67 VLERDGLVIHLPGRGVRVASADLTRLIDAYAVREVLDGVAARFAAERASDADIAKLRAHV 126 Query: 122 DTHEKDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATP 181 +K + Y Q + DFH ++ +GN L L ++++ +S + Sbjct: 127 AGQDKVVDPWDPKAYTQ--SNVDFHMAVMNTAGNASLI-AFVPLLRMTSQVFAPSFSLSV 183 Query: 182 NRPRQAFAEHHRILDALADGDGELADLLMRRHIGASRRNIEHQIAH 227 +R R A EH I++A+A DGE A+ L R HI A+ +E + H Sbjct: 184 DRARDAIREHAAIVEAIAARDGEEAERLARAHIRATTARLEAERPH 229 >mll6988 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 220 Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 65/193 (33%), Positives = 99/193 (51%), Gaps = 4/193 (2%) Query: 22 FRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVGARVVS 81 + +Q A+ G PG ++ E+A G+SR P+REA RL L+V P+ G V Sbjct: 17 YNHVQRALRLGRYKPGDRLIPEEIAAEIGMSRMPVREAFRRLASDGLVVLRPNRGCVVAG 76 Query: 82 LTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEKDEAFQAGRGYYQQEG 141 LT++ L E+F+IR LEG+A RLA R+ E +EL R+L+ E+ A Q+G G + Sbjct: 77 LTVDELFEIFEIRSVLEGLAVRLAVPRIDDEEFEELDRLLERMER--AGQSGGGDWVVRH 134 Query: 142 DYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPNRPRQAFAEHHRILDALADG 201 +FH +I S L + + RI + N+P A EH ++ AL G Sbjct: 135 Q-EFHGRICALSQRPKLIHQISALHVVIEPYMRIWFDDC-NKPLSAREEHAAVIAALRSG 192 Query: 202 DGELADLLMRRHI 214 D A+ +M+ H+ Sbjct: 193 DAHHAEQVMQEHV 205 >SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 224 Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/208 (34%), Positives = 108/208 (51%), Gaps = 15/208 (7%) Query: 17 LSEHVFRK----IQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRV 72 +SE++F K I++ IV GE PG ++ E +LA +G+SR P+REA+ +L L+ Sbjct: 1 MSENIFYKLRDDIENGIVTGEFEPGERLDETQLAMRFGVSRTPIREALMQLSAIGLVEIR 60 Query: 73 PHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEK-DEAF- 130 P GA VV + + E+F++ LEGMA LAA+R + + L L HEK EA Sbjct: 61 PRRGAVVVDPAPQRVYEMFEVMAELEGMAGALAARRHTEEDSAAL---LAAHEKCREAVL 117 Query: 131 --QAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPNRPRQAF 188 + R YY+ E FH I AS + L C L++ R YR NR + +F Sbjct: 118 SEETDRYYYENE---IFHRAIYTASHSGFLEE-QCTTLHRRLRPYRRLQLRVRNRMKVSF 173 Query: 189 AEHHRILDALADGDGELADLLMRRHIGA 216 EH I++A+ G+ + A +R H+ Sbjct: 174 REHGEIVEAILSGNTDGAREGLRSHVAV 201