BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2497.p (221 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0840_2 [E] COG0765 ABC-type amino acid transport system, perm... 174 1e-43 TM0592 [E] COG0765 ABC-type amino acid transport system, permeas... 173 3e-43 alr3187_2 [E] COG0765 ABC-type amino acid transport system, perm... 172 6e-43 AF0232 [E] COG0765 ABC-type amino acid transport system, permeas... 170 2e-42 mll3859 [E] COG0765 ABC-type amino acid transport system, permea... 166 4e-41 >lin0840_2 [E] COG0765 ABC-type amino acid transport system, permease component Lin Listeria innocua Length = 212 Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 81/210 (38%), Positives = 145/210 (69%), Gaps = 2/210 (0%) Query: 10 DSWSSLLHGTMVTVEITAASLVLGCVLGLLIGLGRLNPQRRLIYGLCTFYLTLVRGTPLL 69 SW +LL G +T+ + SL++ ++G+ G +++ +++ G+ T Y+ + RGTPL+ Sbjct: 4 SSWPALLAGMWLTIRLAVVSLIIAFIIGITFGFMKVS-NSKILRGIATVYVDIFRGTPLI 62 Query: 70 VQLFLWFFGLPH-VGLILPAFVCGILGLGIYSGAYISEIVRGSIQSIERGQMEAARSLGL 128 VQ F ++FG+P + +P F+ G++ L + +GAY+ EIVRG IQS+++GQMEAARSLGL Sbjct: 63 VQAFFFYFGIPAALDFRMPVFLAGVIALSLNAGAYMVEIVRGGIQSVDKGQMEAARSLGL 122 Query: 129 PYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKIISITYRSLE 188 P++ AM +V+LPQA MIP N+F+ +K+++++S + + +L G+ I++ T+ S Sbjct: 123 PHKKAMMKVVLPQAIRMMIPSFINQFVITLKDTSIMSAIGLVELTQSGKIIMARTFESTW 182 Query: 189 TYLVIALIYLVLTTVTTLILRRIEKVLRSE 218 T+L+I ++YL++ T+ T + R+E+ LR++ Sbjct: 183 TWLIIGIMYLIVITILTKVSDRLERRLRND 212 >TM0592 [E] COG0765 ABC-type amino acid transport system, permease component Tma Thermotoga maritima Length = 216 Score = 173 bits (438), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 91/211 (43%), Positives = 140/211 (66%), Gaps = 1/211 (0%) Query: 6 SGVWDSWSSLLHGTMVTVEITAASLVLGCVLGLLIGLGRLNPQRRLIYGLCTFYLTLVRG 65 S + D+ LL G + T+++T+ ++++G +G+ +G+GRL+ R + Y + Y+ +RG Sbjct: 6 SVIVDNLPLLLKGALRTLQLTSLAVLIGLAIGIFVGMGRLSKYRIIRYP-SSVYVEFLRG 64 Query: 66 TPLLVQLFLWFFGLPHVGLILPAFVCGILGLGIYSGAYISEIVRGSIQSIERGQMEAARS 125 TPL+VQLFL +FGLP +GL F ++ LGI SGAY++EIVR IQS+ +GQ EAARS Sbjct: 65 TPLMVQLFLVYFGLPELGLEFDRFTAAVIALGINSGAYVAEIVRAGIQSVPKGQYEAARS 124 Query: 126 LGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKIISITYR 185 LG+ + AM VILPQAF ++P LGNEFIAL K+S+L ++ +LM + I+S T+ Sbjct: 125 LGMSHAQAMIYVILPQAFRHILPALGNEFIALAKDSSLAMVIGTVELMRSAQYIVSRTFM 184 Query: 186 SLETYLVIALIYLVLTTVTTLILRRIEKVLR 216 S Y +ALIY +T + +++ +E L+ Sbjct: 185 SFPIYGGVALIYFAITFSVSRLVKFVEGRLK 215 >alr3187_2 [E] COG0765 ABC-type amino acid transport system, permease component Nos Nostoc sp. PCC 7120 Length = 240 Score = 172 bits (435), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 93/208 (44%), Positives = 136/208 (65%), Gaps = 13/208 (6%) Query: 14 SLLHGTMVTVEITAASLVLGCVLGLLIGLGRLN---PQRRLIYGLCTFYLTLVRGTPLLV 70 +LL G +VT+++T S VLG + G LI L RL+ P R F+ RGTPLLV Sbjct: 21 TLLQGALVTIQLTILSTVLGLICGTLIALTRLSQFTPARLFARAYVDFF----RGTPLLV 76 Query: 71 QLFLWFFGLPHVGLIL------PAFVCGILGLGIYSGAYISEIVRGSIQSIERGQMEAAR 124 Q+F+ +FG+P + L +V G++ L + + AYI+EIVR IQSIE GQ EAA+ Sbjct: 77 QIFMIYFGIPALAQQLGFTFNFDRWVAGVIALSVNAAAYIAEIVRAGIQSIETGQTEAAK 136 Query: 125 SLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKIISITY 184 SLGL + MR VI PQAF RM+PPLGNEFI+L+K+++LV+++ +L +G+ I++ Y Sbjct: 137 SLGLNPWLTMRLVIFPQAFRRMLPPLGNEFISLLKDTSLVAVIGFEELFRKGQLIVADNY 196 Query: 185 RSLETYLVIALIYLVLTTVTTLILRRIE 212 R+ E Y +A++YL LT + + +L R+E Sbjct: 197 RAFEIYAAVAIVYLCLTLLASQVLSRLE 224 >AF0232 [E] COG0765 ABC-type amino acid transport system, permease component Afu Archaeoglobus fulgidus Length = 224 Score = 170 bits (431), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 89/188 (47%), Positives = 132/188 (70%), Gaps = 1/188 (0%) Query: 14 SLLHGTMVTVEITAASLVLGCVLGLLIGLGRLNPQRRLIYGLCTFYLTLVRGTPLLVQLF 73 L G VT+++T S+ G ++G + GLGR++ + L + + T Y+ ++RGTPLLVQ+ Sbjct: 18 DLAFGASVTLKLTLISIFFGLIIGTIAGLGRVS-KNPLPFAISTAYVEVIRGTPLLVQIL 76 Query: 74 LWFFGLPHVGLILPAFVCGILGLGIYSGAYISEIVRGSIQSIERGQMEAARSLGLPYRMA 133 + +FGLP +G+ L GI+ L I SGAYI+EIVR I+SI GQMEAARSLG+ Y A Sbjct: 77 IVYFGLPAIGINLQPEPAGIIALSICSGAYIAEIVRAGIESIPIGQMEAARSLGMTYLQA 136 Query: 134 MRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKIISITYRSLETYLVI 193 MR VI PQAF ++P LGNEFIAL+K+S+L+S+++I +L G +I++ T+ + +L + Sbjct: 137 MRYVIFPQAFRNILPALGNEFIALLKDSSLLSVISIVELTRVGRQIVNTTFNAWTPFLGV 196 Query: 194 ALIYLVLT 201 AL YL++T Sbjct: 197 ALFYLMMT 204 >mll3859 [E] COG0765 ABC-type amino acid transport system, permease component Mlo Mesorhizobium loti Length = 226 Score = 166 bits (420), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 90/211 (42%), Positives = 138/211 (65%), Gaps = 2/211 (0%) Query: 10 DSWSSLLHGTMV-TVEITAASLVLGCVLGLLIGLGRLNPQRRLIYGLCTFYLTLVRGTPL 68 +S SLL ++ TV +T +S VLG +GL LGRL + L+ L FY+ + RGTPL Sbjct: 10 ESLPSLLWAALIFTVPLTLSSFVLGLTVGLGAALGRLFGPKPLVM-LVRFYVWIFRGTPL 68 Query: 69 LVQLFLWFFGLPHVGLILPAFVCGILGLGIYSGAYISEIVRGSIQSIERGQMEAARSLGL 128 LVQLFL F+GLP VG++L AF ++G + GAY SEI+R +I S+ +GQ EAA S+G+ Sbjct: 69 LVQLFLIFYGLPSVGILLDAFTAALIGFTLNIGAYTSEIIRAAIGSVPKGQWEAAYSIGM 128 Query: 129 PYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKIISITYRSLE 188 + AMRR ILPQA +PPL N FI+L+K+++L + +T+ ++ ++I++ TY L Sbjct: 129 TWSQAMRRTILPQAGRVAVPPLSNTFISLVKDTSLAAAITVPEMFQAAQRIVATTYEPLI 188 Query: 189 TYLVIALIYLVLTTVTTLILRRIEKVLRSEG 219 Y+ A++YL +++V + + R+E+ L G Sbjct: 189 LYVEAAILYLAMSSVLSALQTRLEERLNRYG 219