BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2485.p (327 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1948 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 398 e-110 RSc1015 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type... 360 3e-99 PM1327 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 192 1e-48 BMEII0433 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-ty... 167 2e-41 TM0955 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type ... 167 3e-41 >PA1948 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Pae Pseudomonas aeruginosa Length = 332 Score = 398 bits (1022), Expect = e-110, Method: Compositional matrix adjust. Identities = 220/316 (69%), Positives = 257/316 (81%), Gaps = 2/316 (0%) Query: 11 RQAAYLAGVKNYLGLIAALLAMCVMFAFLSENFLSAATFITLSNDIPPLVVMSVGMTFIL 70 R+ Y G+ YLGL ALLAM +F+ LS +FLS TF+ ++N IP LVV++VGMTFIL Sbjct: 17 RRGNYF-GLGTYLGLAGALLAMIALFSALSSHFLSYGTFLAIANQIPDLVVLAVGMTFIL 75 Query: 71 IIGGIDLSVGSVMALAASMLSMAMVRWGWPLYAAAPLGVVVAALCGTLTGMVAVHWRIPS 130 I+GGIDLSVGSV+ALAAS +S+A + WGW + AA LG+ A L G +TG + V WRIPS Sbjct: 76 IVGGIDLSVGSVLALAASAVSLATLGWGWGVLPAAMLGMACATLAGCVTGSITVAWRIPS 135 Query: 131 FIVSLGVLEIARGLAYQVTNSRTEYIGSAVDVISSPILFGMSPAFLSAIAIVIIAQLVLT 190 FIVSLGVLE+ARGLAYQ+T+SRT YIG A +S+P+ FG+SPAF+ A+ ++ AQ VLT Sbjct: 136 FIVSLGVLEMARGLAYQMTDSRTAYIGDAYAWLSNPLAFGISPAFVIALLVMFAAQAVLT 195 Query: 191 RTVLGRYWIGIGTNEEAVRLSGVNPNPSKILAFALMGALAGIAALFQVSRLEAADPNGGV 250 RTV GRY IGIGTNEEAVRL+GVNP P KI FALMG LAG+AALFQ+SRLEAADPN GV Sbjct: 196 RTVFGRYLIGIGTNEEAVRLAGVNPKPYKIAVFALMGLLAGLAALFQISRLEAADPNAGV 255 Query: 251 GMELQVIAAVVIGGTSLMGGRGSVVSTFIGVLIISVLEAGLAQVGVSEPMKRIITGAVIV 310 G+ELQVIAAVVIGGTSLMGGRGSVVSTF GVLIISVL AGLAQ+G SEP KRIITGAVIV Sbjct: 256 GLELQVIAAVVIGGTSLMGGRGSVVSTFFGVLIISVLAAGLAQIGASEPTKRIITGAVIV 315 Query: 311 VAVILDTYR-RRGQRH 325 VAV+LDTYR R +R Sbjct: 316 VAVVLDTYRSHRARRQ 331 >RSc1015 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Rso Ralstonia solanacearum Length = 348 Score = 360 bits (924), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 200/283 (70%), Positives = 238/283 (84%) Query: 34 VMFAFLSENFLSAATFITLSNDIPPLVVMSVGMTFILIIGGIDLSVGSVMALAASMLSMA 93 V+F+ LS+ F + +TF T++N+IP L+VM+VGMTF+L+IGGIDLSVGSV+AL+ASMLS+A Sbjct: 53 VLFSLLSDTFFTVSTFTTIANEIPDLLVMAVGMTFVLMIGGIDLSVGSVLALSASMLSIA 112 Query: 94 MVRWGWPLYAAAPLGVVVAALCGTLTGMVAVHWRIPSFIVSLGVLEIARGLAYQVTNSRT 153 M R+GW L AA LGV+ A G LTG V V W IPSFIVSLGVLE+ARGLAY +T+SRT Sbjct: 113 MTRFGWGLAPAALLGVLAATAAGALTGTVTVRWGIPSFIVSLGVLEMARGLAYSLTDSRT 172 Query: 154 EYIGSAVDVISSPILFGMSPAFLSAIAIVIIAQLVLTRTVLGRYWIGIGTNEEAVRLSGV 213 Y+G+AVD +++PI G++P+FL AIAI +I Q+VL RTV GRY + IGTNEEAVRL+GV Sbjct: 173 VYLGAAVDWLATPIALGIAPSFLIAIAITVIGQVVLVRTVFGRYLVAIGTNEEAVRLAGV 232 Query: 214 NPNPSKILAFALMGALAGIAALFQVSRLEAADPNGGVGMELQVIAAVVIGGTSLMGGRGS 273 NP+P KI FALMG L+G+AALFQVSRLEAADPN G GMELQVIAAVVIGGTSLMGGRGS Sbjct: 233 NPHPYKIAVFALMGWLSGLAALFQVSRLEAADPNAGGGMELQVIAAVVIGGTSLMGGRGS 292 Query: 274 VVSTFIGVLIISVLEAGLAQVGVSEPMKRIITGAVIVVAVILD 316 V T GVLIISVLEAGLAQ+G SEP KRIITGAVIV AV++D Sbjct: 293 VARTLFGVLIISVLEAGLAQIGASEPTKRIITGAVIVAAVVMD 335 >PM1327 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Pmu Pasteurella multocida Length = 347 Score = 192 bits (487), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 127/310 (40%), Positives = 184/310 (59%), Gaps = 26/310 (8%) Query: 40 SENFLSAATFITLSNDIPPLVVMSVGMTFILIIGGIDLSVGSVMALAASMLSMAMVRWGW 99 S+ FLS I + + + V+SVGMT++++ GGIDLSVGS++AL+A L + WG Sbjct: 33 SDVFLSTNNIINILLQVSIICVISVGMTYVILTGGIDLSVGSIVALSAVCLGV-FTHWGM 91 Query: 100 PLYAAAP-----LGVVVAA---------LCGTLTGMVAVHWRIPSFIVSLGVLEIARGLA 145 P L +V++A LCG + G+V V+ ++ FI +LG++ IARGLA Sbjct: 92 DWLGENPSSFSVLMIVISAIIATIFVGILCGYVNGLVIVYGKVTPFITTLGMMGIARGLA 151 Query: 146 YQVTNSRTEY--------IGSAVDVISSPILFGMSPAFLSAIAIVIIAQLVLTRTVLGRY 197 +++ +T Y +G+ ++ F + + A+ +V+++ VLT+T+ GR Sbjct: 152 LTISDGKTIYNFPDTLRFLGNGRIALTET--FALPVPVIIALLVVLVSFYVLTQTMFGRQ 209 Query: 198 WIGIGTNEEAVRLSGVNPNPSKILAFALMGALAGIAALFQVSRLEAADPNGGVGMELQVI 257 +G N EAVRLSG+N +I A+ + GALA I A+ V RL AA P G G EL I Sbjct: 210 IYALGGNREAVRLSGINIEKLEIKAYVINGALAAIGAIILVGRLNAAQPIAGNGYELDAI 269 Query: 258 AAVVIGGTSLMGGRGSVVSTFIGVLIISVLEAGLAQVGVSEPMKRIITGAVIVVAVILDT 317 AA VIGGTSLMGG GSVVST IG LI+ VL+ GL + V+ ++R+I G VI++AV LD Sbjct: 270 AATVIGGTSLMGGVGSVVSTSIGALIMGVLQNGLTLLNVTSYLQRLIIGLVIILAVFLDQ 329 Query: 318 YRRRGQRHAR 327 RRG+ R Sbjct: 330 L-RRGEVSTR 338 >BMEII0433 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Bme Brucella melitensis Length = 346 Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 112/313 (35%), Positives = 171/313 (54%), Gaps = 19/313 (6%) Query: 28 ALLAMCVMFAFLSENFLSAATFITLSNDIPPLVVMSVGMTFILIIGGIDLSVGSVMALAA 87 AL+A+ +F+FLS + + F+ +S+ + ++++GM +++ GGIDLSVGS + LA Sbjct: 34 ALIAIIAVFSFLSPYYFTVDNFLIMSSHVAIFGLLAIGMLLVILNGGIDLSVGSTLGLAG 93 Query: 88 S-----MLSMAMVRWG----WPLYAAAPLGVVVAALCGTLTGMVAVHWRIPSFIVSLGVL 138 M + + +G +P++A + + A G + G++ + R+P+F+ +LGVL Sbjct: 94 VVAGFLMQGVTLQEFGIILYFPVWAVVLITCALGAFVGAVNGVLIAYLRVPAFVATLGVL 153 Query: 139 EIARGLAYQVTNS--------RTEYIGSAVDVISSPILFGMSPAFLSAIAIVIIAQLVLT 190 ARG+A +TN R E + D + LFG+ L + II +VL Sbjct: 154 YCARGVALLMTNGLTYNNLGGRPELGNTGFDWLGFNKLFGVPIGVLVLAILAIICAIVLN 213 Query: 191 RTVLGRYWIGIGTNEEAVRLSGVNPNPSKILAFALMGALAGIAALFQVSRLEAADPNGGV 250 RT GR+ G NE A LSGV K+ + + G A IA L S+L +A P G Sbjct: 214 RTAFGRWLYASGGNERAAELSGVPVKRVKVSVYVISGICAAIAGLVLSSQLTSAGPTAGT 273 Query: 251 GMELQVIAAVVIGGTSLMGGRGSVVSTFIGVLIISVLEAGLAQVGVSEPMKRIITGAVIV 310 EL IAAVVIGG +L GGRG++ T +G +I L GL +GVS + + TGAVIV Sbjct: 274 TYELTAIAAVVIGGAALTGGRGTIQGTLLGAFVIGFLSDGLVIIGVSSYWQTVFTGAVIV 333 Query: 311 VAVILDT--YRRR 321 +AV+L++ Y RR Sbjct: 334 LAVLLNSIQYSRR 346 >TM0955 [G] COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components Tma Thermotoga maritima Length = 331 Score = 167 bits (423), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 109/310 (35%), Positives = 173/310 (55%), Gaps = 16/310 (5%) Query: 29 LLAMCVMFAFLSENFLSAATFITLSNDIPPLVVMSVGMTFILIIGGIDLSVGSVMALAAS 88 LL + V+F+FLS FL+ F + + ++VGMTF+++ GGIDLSVGS++ + + Sbjct: 25 LLGLIVLFSFLSNRFLTLENFWIILRQTAVNLCIAVGMTFVILTGGIDLSVGSILGFSGA 84 Query: 89 MLSMAMVRWGWPLYA-----------AAPLGVVVAALCGTLTGMVAVHWRIPSFIVSLGV 137 + + ++++G L A A+ +GV+ G G + + IP F+ +LG Sbjct: 85 V-TAKLLKYGLILSAFGVVLKFNPLGASIIGVLAGFAIGLFNGFIITRFNIPPFVATLGT 143 Query: 138 LEIARGLAYQVTNSR-TEYIGSAVDVISSPILFGMS-PAFLSAIAIVIIAQLVLTRTVLG 195 + RG +T +G + D I S G+ P +++AIA + +L +T G Sbjct: 144 MTAVRGFIMLLTKGHPITRLGDSFDFIGSGWFLGIPMPVWIAAIA-TGVGIFILRKTQFG 202 Query: 196 RYWIGIGTNEEAVRLSGVNPNPSKILAFALMGALAGIAALFQVSRLEAADPNGGVGMELQ 255 RY +G NE+A LSGVN +K+ +A+ G L+ +A L +RL++A PN G+ EL Sbjct: 203 RYVYAVGGNEKAAVLSGVNSKLTKLWVYAISGILSAVAGLIVTARLDSAQPNAGLMYELD 262 Query: 256 VIAAVVIGGTSLMGGRGSVVSTFIGVLIISVLEAGLAQVGVSEPMKRIITGAVIVVAVIL 315 IAA VIGG SL GG+G+++ T +G LII VL GL VGVS +++ G +I+ AVI Sbjct: 263 AIAATVIGGASLSGGKGTLIGTVVGALIIGVLNDGLVLVGVSPFWQQVAKGFIIIAAVIA 322 Query: 316 DTYRRRGQRH 325 + RG++ Sbjct: 323 EKL-GRGEKE 331