BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2472.p         (105 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1543 [K] COG0640 Predicted transcriptional regulators Rso Ral...   102   2e-22
AGl2725 [K] COG0640 Predicted transcriptional regulators Atu Agr...    96   2e-20
BMEII0810 [K] COG0640 Predicted transcriptional regulators Bme B...    89   2e-18
mlr2159 [K] COG0640 Predicted transcriptional regulators Mlo Mes...    89   3e-18
CC2864 Non COG                                                         88   5e-18

>RSc1543 [K] COG0640 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 121

 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 69/93 (74%)

Query: 10  DQMRHAAGQAVAALKLLANEDRLLLMCQLSQQEMCVSELEQTLDIRQPTLSQQLGVLRTE 69
           D +R AA QA A LK +A+EDRLLL+CQL+Q E  V ELE  + + QP+LSQ LGVLR E
Sbjct: 22  DMLRDAAAQACAVLKAMAHEDRLLLLCQLTQGERNVGELEMLVGLHQPSLSQHLGVLRDE 81

Query: 70  GVVSTRREGKRVYYRVADPRLLEMLGLMYHLYC 102
           G+V+TRR+GK +YYR+A   +++++  +  LYC
Sbjct: 82  GLVATRRDGKYIYYRLASFEVIQIMQTLSSLYC 114


>AGl2725 [K] COG0640 Predicted transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 117

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 5   VPLQADQMRHAAGQAVAALKLLANEDRLLLMCQLSQQEMCVSELEQTLDIRQPTLSQQLG 64
           +PL A  M   A +    LK LA+  RL+L C L+Q E  V ELE  LDIRQPTLSQQLG
Sbjct: 16  IPLPA--MEKRATEVAILLKTLAHPARLMLACTLAQGEFSVGELEAKLDIRQPTLSQQLG 73

Query: 65  VLRTEGVVSTRREGKRVYYRVADPRLLEMLGLMYHLYCPKE 105
           VLR  G+V TRRE K+++YR+A+ +   ++  +Y ++C  E
Sbjct: 74  VLREAGIVDTRREAKQIFYRLAEDKAARLIEALYAIFCAPE 114


>BMEII0810 [K] COG0640 Predicted transcriptional regulators Bme Brucella
           melitensis
          Length = 117

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 68/104 (65%), Gaps = 1/104 (0%)

Query: 1   MDARVPLQADQMRHAAGQAVAALKLLANEDRLLLMCQLSQQEMCVSELEQTLDIRQPTLS 60
           MD R+ +  +QM   A +    LK L++  RL+L C L++ E  V ELE+ L IRQPTLS
Sbjct: 11  MDTRL-VTREQMEARANEVAELLKTLSHPARLMLACTLAEGEYSVGELEEMLGIRQPTLS 69

Query: 61  QQLGVLRTEGVVSTRREGKRVYYRVADPRLLEMLGLMYHLYCPK 104
           QQLGVLR   +V TRRE K++YYR+ + +  +++  +Y ++C +
Sbjct: 70  QQLGVLREADIVETRREAKQIYYRLVETKAAKLIDALYGIFCKE 113


>mlr2159 [K] COG0640 Predicted transcriptional regulators Mlo Mesorhizobium
           loti
          Length = 112

 Score = 89.0 bits (219), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 62/91 (68%)

Query: 12  MRHAAGQAVAALKLLANEDRLLLMCQLSQQEMCVSELEQTLDIRQPTLSQQLGVLRTEGV 71
           M   AG+  A LK LA+  RL+L+C L + E  VS+LE+TLDI QP LSQQL VLR   +
Sbjct: 17  MESRAGEVAALLKTLAHPMRLMLVCTLVEGEYSVSQLEETLDIHQPNLSQQLTVLRDANI 76

Query: 72  VSTRREGKRVYYRVADPRLLEMLGLMYHLYC 102
           V TRR+GK+++YR+   +  +++  +Y ++C
Sbjct: 77  VETRRDGKQIFYRLTAEKAAQLVAALYTIFC 107


>CC2864 Non COG
          Length = 123

 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 64/100 (64%), Gaps = 2/100 (2%)

Query: 4   RVPLQADQMRHAAGQAVAALKLLANEDRLLLMCQLSQQEMCVSELEQTLDIRQPTLSQQL 63
           R P+   Q   +A QA   L+ L+NE RL+++CQL++ E  V +++  + + Q  LSQ L
Sbjct: 9   RFPVS--QFEASAAQAAKLLRALSNERRLMILCQLAEGERSVGQIQPLVGLSQSALSQHL 66

Query: 64  GVLRTEGVVSTRREGKRVYYRVADPRLLEMLGLMYHLYCP 103
            VLR EGVV+ RRE   V+YR+ADP  L+++  +  ++CP
Sbjct: 67  AVLRDEGVVAARREATTVWYRIADPAALKVVATLAEIFCP 106