BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2468.p         (122 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MTH793 [I] COG0183 Acetyl-CoA acetyltransferase Mth Methanotherm...    32   0.40 
STM3097 [L] COG0816 Predicted endonuclease involved in recombina...    29   2.5  
MJ1549 [I] COG0183 Acetyl-CoA acetyltransferase Mja Methanococcu...    28   3.6  
PM0516 [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta s...    28   3.9  
ZyqgF [L] COG0816 Predicted endonuclease involved in recombinati...    28   3.9  

>MTH793 [I] COG0183 Acetyl-CoA acetyltransferase Mth Methanothermobacter
           thermautotrophicus
          Length = 383

 Score = 32.0 bits (71), Expect = 0.40,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%)

Query: 37  AQYPVIQQTRMEMRSRPILVPTGQTRCSSVTNGNRTDTVCQDIMRTEYQPYPVYVTVDIN 96
           AQ+P+       M S  +  P     CS +++G     +C   M  EY   PVYV     
Sbjct: 180 AQFPMKVTVEQVMNSTMVADPLRLLDCSPISDGAAAVILCPADMAREYTDTPVYVKASAQ 239

Query: 97  EYG 99
             G
Sbjct: 240 ASG 242


>STM3097 [L] COG0816 Predicted endonuclease involved in recombination
           (possible Holliday junction resolvase in Mycoplasmas and
           B. subtilis) Sty Salmonella typhimurium LT2
          Length = 138

 Score = 29.3 bits (64), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 74  TVCQDIMRTEYQPYPVYVTVDINEYGRDQVITACARNQCMKTHG 117
           T+ + +++ E+QP  + V + +N  G +Q +TA AR    + HG
Sbjct: 43  TLIERLLK-EWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHG 85


>MJ1549 [I] COG0183 Acetyl-CoA acetyltransferase Mja Methanococcus
           jannaschii
          Length = 392

 Score = 28.5 bits (62), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 36  YAQYPVIQQTRMEMRSRPILVPTGQTRCSSVTNGNRTDTVCQ 77
           YAQ+P        + S P+  P     CS V++G     VC+
Sbjct: 179 YAQFPFKVTLEQVLNSSPVAEPLRLLHCSPVSDGAAALIVCE 220


>PM0516 [L] COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit
           (contains helicase and exonuclease domains) Pmu
           Pasteurella multocida
          Length = 1230

 Score = 28.5 bits (62), Expect = 3.9,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 79  IMRTEYQPYPVYVTVDINEYGRDQVITACARNQCMKTHGN 118
           I   E++  P++++  I E   DQV+      QC + HGN
Sbjct: 897 IQVEEFEALPIHLSTSIKENSADQVL------QCAEFHGN 930


>ZyqgF [L] COG0816 Predicted endonuclease involved in recombination
           (possible Holliday junction resolvase in Mycoplasmas and
           B. subtilis) EcZ Escherichia coli O157:H7 EDL933
          Length = 138

 Score = 28.5 bits (62), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 83  EYQPYPVYVTVDINEYGRDQVITACARNQCMKTHG 117
           E+QP  + V + +N  G +Q +TA AR    + HG
Sbjct: 51  EWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHG 85