BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2460.p (271 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2349 [P] COG1464 ABC-type metal ion transport system, periplas... 231 1e-60 YPO1071 [P] COG1464 ABC-type metal ion transport system, peripla... 167 3e-41 STM0245 [P] COG1464 ABC-type metal ion transport system, peripla... 163 4e-40 ZyaeC [P] COG1464 ABC-type metal ion transport system, periplasm... 161 2e-39 ECs0199 [P] COG1464 ABC-type metal ion transport system, peripla... 161 2e-39 >PA2349 [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Pae Pseudomonas aeruginosa Length = 264 Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 122/264 (46%), Positives = 167/264 (63%), Gaps = 6/264 (2%) Query: 8 LLVLTLASLPLAHVAQAAD-KLRIGVVPGAYGDSVAVAAKEAKSQGIDVQVVEFTDWTTP 66 L L+LA L + AQAAD L+IG A+ + VA EA QG+ V++VEF+DW P Sbjct: 5 LKTLSLAVLLGSGPAQAADAPLKIGTT-AAFAPPLEVAVSEAGKQGLKVELVEFSDWNAP 63 Query: 67 NVAVDAGDLDLNYFQHQPFLDNAIKKNGYKLASAGTGILSNVGLYSLKHKSFAELPQGAK 126 N+ + GD+D NYFQH PFL+NA ++ G++L GI++NVGLYS ++ S AELP+GA Sbjct: 64 NITLAQGDIDANYFQHVPFLENANREGGFQLKPFAPGIINNVGLYSKRYASLAELPEGAS 123 Query: 127 VGIANDPVNQGRGLLLLQSVGLIKLKPNVGYLGSLDDIVENPKKLTFVEVEGPQLVRITP 186 V IANDP+N GRGL LLQ GL+KL+ VGY +LDDIV+NPK + E+E QL R Sbjct: 124 VAIANDPINGGRGLQLLQKAGLLKLRDGVGYKATLDDIVDNPKDIRITELEAVQLARALD 183 Query: 187 DVDLALGYPHFIVAAKAFDASSGLAYSGISDARFAIQFVTKAS-RVNDPVVQKFIHIYQN 245 D DLA GYPH++ A D + L + GI + + IQFVT+ + D + +F+ IYQ+ Sbjct: 184 DFDLAQGYPHYLRLAGTIDPTRALLFDGIDNREYVIQFVTRGDYQDRDGRLARFVDIYQH 243 Query: 246 SAAVKAVIHRAFNNDNRLYTLAWQ 269 S V+A + +A LY W+ Sbjct: 244 SPVVRAALDKAHGT---LYQPGWE 264 >YPO1071 [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Ype Yersinia pestis Length = 271 Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 103/253 (40%), Positives = 144/253 (56%), Gaps = 5/253 (1%) Query: 9 LVLTLASLPLAHVAQAADKLRIGVVPGAYGDSVAVAAKEAKSQ-GIDVQVVEFTDWTTPN 67 L+ TL + +A + +++GV+ GA VA K AK + G+DV++V F D+ PN Sbjct: 14 LIGTLTLVGCGPTEKAPNHIKVGVIVGAEQQVAEVAQKVAKEKYGLDVELVTFNDYVLPN 73 Query: 68 VAVDAGDLDLNYFQHQPFLDNAIKKNGYKLASAGTGILSNVGLYSLKHKSFAELPQGAKV 127 A+ GD+DLN FQH+P+LD IK GYKL S G + + YS K KS EL G++V Sbjct: 74 EALSKGDIDLNAFQHKPYLDQQIKDRGYKLVSVGNSFVYPIAGYSKKIKSLDELQPGSQV 133 Query: 128 GIANDPVNQGRGLLLLQSVGLIKLKPNVGYLGSLDDIVENPKKLTFVEVEGPQLVRITPD 187 + NDP N GR LLLLQSVGLIKLK VG L ++ D+VENPK L VE+E PQL R D Sbjct: 134 ALPNDPTNLGRSLLLLQSVGLIKLKDGVGLLPTVLDVVENPKNLKLVELEAPQLPRSLDD 193 Query: 188 VDLALGYPHFIVAAKA--FDASSGLAYSGISDARFAIQFVTKASRVNDPVVQKFIHIYQN 245 +AL + A++ A GL + ++ + V + + V+KF+ YQ+ Sbjct: 194 QQIALAIINTTYASQIGLTPAKDGL-FVEDKESPYVNLIVAREDNKDAENVKKFVQAYQS 252 Query: 246 SAAVKAVIHRAFN 258 A ++AFN Sbjct: 253 DEVYDAA-NKAFN 264 >STM0245 [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Sty Salmonella typhimurium LT2 Length = 271 Score = 163 bits (412), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 106/256 (41%), Positives = 141/256 (55%), Gaps = 16/256 (6%) Query: 13 LASLPLAHVAQAA---DKLRIGVVPGAYGDSVAVAAKEAKSQ-GIDVQVVEFTDWTTPNV 68 + SL LA Q + +++GV+ GA VA K AK + G+DV++V F D+ PN Sbjct: 15 IGSLALAGCGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKEKYGLDVELVTFNDYVLPNE 74 Query: 69 AVDAGDLDLNYFQHQPFLDNAIKKNGYKLASAGTGILSNVGLYSLKHKSFAELPQGAKVG 128 A+ GD+D N FQH+P+LD IK GYKL S G + + YS K KS EL G++V Sbjct: 75 ALSKGDIDANAFQHKPYLDQQIKDRGYKLVSVGKTFVYPIAGYSKKIKSLDELKDGSQVA 134 Query: 129 IANDPVNQGRGLLLLQSVGLIKLKPNVGYLGSLDDIVENPKKLTFVEVEGPQLVRITPDV 188 + NDP N GR LLLLQ VGLIKLK VG L + DIVENPK L VE+E PQL R D Sbjct: 135 VPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTSLDIVENPKNLKIVELEAPQLPRSLDDA 194 Query: 189 DLALGYPHFIVAAKAFDASSGL--AYSGI----SDARFAIQFVTKASRVNDPVVQKFIHI 242 +AL V + + GL A GI D+ + VT+ + V+KF+ Sbjct: 195 QIALA-----VINTTYASQIGLTPAKDGIFVEDKDSPYVNLIVTREDNKDAENVKKFVQA 249 Query: 243 YQNSAAVKAVIHRAFN 258 YQ+ +A ++ FN Sbjct: 250 YQSDEVYEAA-NKVFN 264 >ZyaeC [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen EcZ Escherichia coli O157:H7 EDL933 Length = 271 Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 101/257 (39%), Positives = 144/257 (56%), Gaps = 13/257 (5%) Query: 9 LVLTLASLPLAHVAQAADKLRIGVVPGAYGDSVAVAAKEAKSQ-GIDVQVVEFTDWTTPN 67 L+ +LA + + + +++GV+ GA VA K AK + G+DV++V F D+ PN Sbjct: 14 LIGSLALVGCGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKDKYGLDVELVTFNDYVLPN 73 Query: 68 VAVDAGDLDLNYFQHQPFLDNAIKKNGYKLASAGTGILSNVGLYSLKHKSFAELPQGAKV 127 A+ GD+D N FQH+P+LD +K GYKL + G + + YS K KS EL G++V Sbjct: 74 EALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQV 133 Query: 128 GIANDPVNQGRGLLLLQSVGLIKLKPNVGYLGSLDDIVENPKKLTFVEVEGPQLVRITPD 187 + NDP N GR LLLLQ VGLIKLK VG L ++ D+VENPK L VE+E PQL R D Sbjct: 134 AVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIVELEAPQLPRSLDD 193 Query: 188 VDLALGYPHFIVAAKAFDASSGL--AYSGI----SDARFAIQFVTKASRVNDPVVQKFIH 241 +AL V + + GL A +GI D+ + VT+ + V+KF+ Sbjct: 194 AQIALA-----VINTTYASQIGLTPAKNGIFVEDKDSPYVNLIVTREDNKDAENVKKFVQ 248 Query: 242 IYQNSAAVKAVIHRAFN 258 YQ+ +A ++ FN Sbjct: 249 AYQSDEVYEAA-NKVFN 264 >ECs0199 [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Ecs Escherichia coli O157:H7 Length = 271 Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 101/257 (39%), Positives = 144/257 (56%), Gaps = 13/257 (5%) Query: 9 LVLTLASLPLAHVAQAADKLRIGVVPGAYGDSVAVAAKEAKSQ-GIDVQVVEFTDWTTPN 67 L+ +LA + + + +++GV+ GA VA K AK + G+DV++V F D+ PN Sbjct: 14 LIGSLALVGCGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKDKYGLDVELVTFNDYVLPN 73 Query: 68 VAVDAGDLDLNYFQHQPFLDNAIKKNGYKLASAGTGILSNVGLYSLKHKSFAELPQGAKV 127 A+ GD+D N FQH+P+LD +K GYKL + G + + YS K KS EL G++V Sbjct: 74 EALSKGDIDANAFQHKPYLDQQLKDRGYKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQV 133 Query: 128 GIANDPVNQGRGLLLLQSVGLIKLKPNVGYLGSLDDIVENPKKLTFVEVEGPQLVRITPD 187 + NDP N GR LLLLQ VGLIKLK VG L ++ D+VENPK L VE+E PQL R D Sbjct: 134 AVPNDPTNLGRSLLLLQKVGLIKLKDGVGLLPTVLDVVENPKNLKIVELEAPQLPRSLDD 193 Query: 188 VDLALGYPHFIVAAKAFDASSGL--AYSGI----SDARFAIQFVTKASRVNDPVVQKFIH 241 +AL V + + GL A +GI D+ + VT+ + V+KF+ Sbjct: 194 AQIALA-----VINTTYASQIGLTPAKNGIFVEDKDSPYVNLIVTREDNKDAENVKKFVQ 248 Query: 242 IYQNSAAVKAVIHRAFN 258 YQ+ +A ++ FN Sbjct: 249 AYQSDEVYEAA-NKVFN 264