BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2454.p (242 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3408 [E] COG1126 ABC-type polar amino acid transport system, ... 377 e-104 CAC0112 [E] COG1126 ABC-type polar amino acid transport system, ... 301 6e-82 Cgl1298 [E] COG1126 ABC-type polar amino acid transport system, ... 295 6e-80 AF0680 [E] COG1126 ABC-type polar amino acid transport system, A... 293 2e-79 lin0841 [E] COG1126 ABC-type polar amino acid transport system, ... 293 3e-79 >RSc3408 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Rso Ralstonia solanacearum Length = 253 Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust. Identities = 185/242 (76%), Positives = 209/242 (86%) Query: 1 MIEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 MIE++ + K FG+H VL+ VSL V +GEVVCLIGPSGSGKSTVLRCINGLESY+ G+I Sbjct: 1 MIEIRELQKHFGEHHVLRGVSLRVDKGEVVCLIGPSGSGKSTVLRCINGLESYDGGEIRA 60 Query: 61 DGQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARGQAMAL 120 G+RVDRD IH LR+R+GMVFQRFNLFPHR+VLENV EGPV+V + AR +AMAL Sbjct: 61 FGERVDRDGKAIHTLRSRMGMVFQRFNLFPHRSVLENVMEGPVYVKGERPDAARAKAMAL 120 Query: 121 LEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMR 180 LEKVGLAA+ AYPAQLSGGQQQRVAIAR+LAM+PEA+LFDEPTSALDPELVG+VL VMR Sbjct: 121 LEKVGLAAKAQAYPAQLSGGQQQRVAIARALAMEPEAMLFDEPTSALDPELVGDVLEVMR 180 Query: 181 TLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDFLRRVI 240 LA +GMTMIVVTHEMGFAREVADRVCFLHSG+IVE GPAAQVL AP+ RTQDFLRRV+ Sbjct: 181 ALAREGMTMIVVTHEMGFAREVADRVCFLHSGTIVEEGPAAQVLGAPRQPRTQDFLRRVL 240 Query: 241 SK 242 K Sbjct: 241 HK 242 >CAC0112 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Cac Clostridium acetobutylicum Length = 245 Score = 301 bits (772), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 137/239 (57%), Positives = 181/239 (75%) Query: 2 IEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILID 61 IEVK + K +G +EVLK+++L++ EVVC+IGPSGSGKST+LRC+N LE G ++ID Sbjct: 7 IEVKELKKSYGSNEVLKEINLTIDRSEVVCIIGPSGSGKSTLLRCMNRLEEITAGQLMID 66 Query: 62 GQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARGQAMALL 121 G+ + + +I +LR VGMVFQ FNLFPH +VL+N+T P+ +N++ +E+A A LL Sbjct: 67 GKDISDKNINIDKLRENVGMVFQHFNLFPHLSVLKNITFAPIELNKMSKEEAEKTAFKLL 126 Query: 122 EKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMRT 181 +KVGL + + YP +LSGGQ+QRVAIAR+LAM P+ +LFDEPTSALDPE+VGEVL VM+ Sbjct: 127 DKVGLNDKANTYPDKLSGGQKQRVAIARALAMNPDIMLFDEPTSALDPEMVGEVLGVMKD 186 Query: 182 LAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDFLRRVI 240 LA +GMTM+VVTHEMGFAREVADRV F+ G IVE G + P RT+DFL +V+ Sbjct: 187 LAKEGMTMVVVTHEMGFAREVADRVIFMADGYIVEQGTPDDIFKNPTQDRTKDFLNKVL 245 >Cgl1298 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Cgl Corynebacterium glutamicum Length = 254 Score = 295 bits (755), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 144/250 (57%), Positives = 184/250 (73%), Gaps = 10/250 (4%) Query: 1 MIEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILI 60 MI+ +++ K +G+ EVLK + L V +G V CLIGPSGSGKST+LRC+N LE G + + Sbjct: 5 MIDAQQVCKNYGRLEVLKGIDLQVPKGTVTCLIGPSGSGKSTMLRCVNHLEKVNAGRLYV 64 Query: 61 DGQRV---DRDSA-------DIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPR 110 DG + +RD D + R+ +GMVFQ FNLFPHRTV+EN+ E P+ V + P Sbjct: 65 DGDLIGYRERDGVLYEISEKDAAKQRSDIGMVFQNFNLFPHRTVIENIIEAPIHVKKQPE 124 Query: 111 EQARGQAMALLEKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPE 170 +AR +AM LLE+VGLA + DAYP QLSGGQQQRVAIAR++AM+P+ +LFDEPTSALDPE Sbjct: 125 SKARARAMELLEQVGLAHKADAYPVQLSGGQQQRVAIARAVAMEPKLMLFDEPTSALDPE 184 Query: 171 LVGEVLAVMRTLAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHA 230 LVGEVL VM+ LA DGMTM+VVTHEMGFA EVAD+V F+ G +VE+G QVL P+ Sbjct: 185 LVGEVLRVMKQLADDGMTMLVVTHEMGFAHEVADQVVFMADGVVVEAGTPEQVLDNPKEQ 244 Query: 231 RTQDFLRRVI 240 RT+DFL ++ Sbjct: 245 RTKDFLSSLL 254 >AF0680 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Afu Archaeoglobus fulgidus Length = 242 Score = 293 bits (750), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 142/239 (59%), Positives = 177/239 (74%) Query: 2 IEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILID 61 +E+ + K FG+ EVLK V++ V +GEVV +IGPSGSGKST+LRCIN LE G IL+D Sbjct: 4 LEIIDLHKRFGELEVLKGVTMKVEKGEVVVIIGPSGSGKSTLLRCINRLEEPTSGKILLD 63 Query: 62 GQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARGQAMALL 121 G + DI+++R R+G+VFQ+FNLFPH T L+NVT P+ + ++ + +A M LL Sbjct: 64 GVDITNSKIDINKVRQRIGIVFQQFNLFPHLTALQNVTLAPIKIKKMSKREAEELGMRLL 123 Query: 122 EKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMRT 181 EKVGL + D YPAQLSGGQQQRVAIAR+LAM PE +LFDE TSALDPELV EVL VM+ Sbjct: 124 EKVGLEDKADYYPAQLSGGQQQRVAIARALAMNPEVMLFDEVTSALDPELVKEVLDVMKQ 183 Query: 182 LAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDFLRRVI 240 LA DGMTM+VVTHEMGFAREV DRV F+ G IVE G Q+ S P+H RT+ FL ++ Sbjct: 184 LARDGMTMVVVTHEMGFAREVGDRVIFMDGGVIVEEGKPEQIFSNPKHERTRKFLSMIL 242 >lin0841 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Lin Listeria innocua Length = 242 Score = 293 bits (749), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 135/239 (56%), Positives = 176/239 (73%) Query: 2 IEVKRISKCFGQHEVLKDVSLSVAEGEVVCLIGPSGSGKSTVLRCINGLESYERGDILID 61 ++V + K FG +EVLK + + V EGEVVC+IGPSGSGKST LRC+N LE G++++D Sbjct: 4 LKVTGLKKSFGANEVLKGIDIEVKEGEVVCVIGPSGSGKSTFLRCMNNLEEITAGEVVVD 63 Query: 62 GQRVDRDSADIHRLRTRVGMVFQRFNLFPHRTVLENVTEGPVFVNRVPREQARGQAMALL 121 + DI+++R +GMVFQ FNLFPH +VLEN+T PV + ++ +E A+ A+ LL Sbjct: 64 DFNITDKKVDINKVRENIGMVFQHFNLFPHLSVLENITLAPVELKKMDKEAAKSNALRLL 123 Query: 122 EKVGLAARCDAYPAQLSGGQQQRVAIARSLAMQPEAILFDEPTSALDPELVGEVLAVMRT 181 E+VGL + D +P QLSGGQ+QRVAIAR+LAM P+ +LFDEPTSALDPE+VGEVL VM+ Sbjct: 124 EQVGLKEKADEFPNQLSGGQKQRVAIARALAMDPDIMLFDEPTSALDPEMVGEVLGVMKE 183 Query: 182 LAADGMTMIVVTHEMGFAREVADRVCFLHSGSIVESGPAAQVLSAPQHARTQDFLRRVI 240 LA DGMTM++VTHEMGFAREV DRV F+ G IVE G A + P + RT FL +V+ Sbjct: 184 LAKDGMTMMIVTHEMGFAREVGDRVIFMDGGYIVEEGKPADIFDNPTNERTISFLDKVL 242