BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2441.p (251 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1819 [K] COG1414 Transcriptional regulator Bha Bacillus halodu... 130 3e-30 BS_ycsO [K] COG1414 Transcriptional regulator Bsu Bacillus subtilis 126 4e-29 BH2137 [K] COG1414 Transcriptional regulator Bha Bacillus halodu... 118 2e-26 ECs2537 [K] COG1414 Transcriptional regulator Ecs Escherichia co... 110 2e-24 Z2874 [K] COG1414 Transcriptional regulator EcZ Escherichia coli... 110 2e-24 >BH1819 [K] COG1414 Transcriptional regulator Bha Bacillus halodurans Length = 252 Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 135/244 (55%), Gaps = 2/244 (0%) Query: 8 AVEETLGLLLLVAQCPGLGVTELSLRSGMTKARAFRMLYTLEKNGLVCRDNQAPIYGLGY 67 V +++ LL L P L + E+ +SGM K RM+ +LE+ G + + + Y LG Sbjct: 7 TVIKSMNLLNLFRTYPTLTLQEMVKQSGMPKTSVHRMINSLEEMGFLQKRHDGA-YELGV 65 Query: 68 NALYLGVAAEGQISLARLGKKYLRQIGIACNESVQMRIRDGLESVCIARWESFEPIRVQT 127 L LG ++ L ++ + + E+V + +RDG E++ I + ++ P+R+ T Sbjct: 66 VFLELGQLVSDRLDLRQVAFPIMEALRNQVEEAVHLTVRDGDEAIYIEKLDTLHPVRLFT 125 Query: 128 QPGSRRPLYVGASGKVLLAYAPREIQDHVL-RTERKRFTSATLVNRSSLKQAIAKVLKTG 186 + G R PLY GA +V+L++ P + Q L R E T+ ++ LK+ I++ +TG Sbjct: 126 KVGRRAPLYAGACQRVILSFLPEQEQTAYLERVELIPLADGTITDKLLLKERISETQQTG 185 Query: 187 HAVSYGEMSADSVAIAAPVFNAKAEVMAALSVAGPASRIRDEDVAATAGMLREAARQLSM 246 A+S+ E+ ++ AIAAP+++ ++A +S+AGP R+ +E ++ L+ AA+ +S Sbjct: 186 VAISHSELENNTTAIAAPIYDHSGTIVAGISIAGPDIRVTEERLSTLKVTLKNAAKSISK 245 Query: 247 NLGY 250 LG+ Sbjct: 246 QLGW 249 >BS_ycsO [K] COG1414 Transcriptional regulator Bsu Bacillus subtilis Length = 246 Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 74/238 (31%), Positives = 131/238 (55%), Gaps = 2/238 (0%) Query: 9 VEETLGLLLLVAQCPGLGVTELSLRSGMTKARAFRMLYTLEKNGLVCRDNQAPIYGLGYN 68 V +++ LL L P L ++EL +GM K RM+ +LE+ G + RD Y LG Sbjct: 8 VVKSMALLNLFLHKPSLTLSELVSLTGMPKTSVHRMVSSLEEMGFLSRDASGA-YSLGLV 66 Query: 69 ALYLGVAAEGQISLARLGKKYLRQIGIACNESVQMRIRDGLESVCIARWESFEPIRVQTQ 128 L G ++ + ++ K + ++ +E+VQ+ +RDG E++ + + E + +R+ T Sbjct: 67 FLEFGQLVADRLDIRKIAKPVMEELCREVDEAVQLIMRDGNEAIYVEKIEGTQTVRLYTA 126 Query: 129 PGSRRPLYVGASGKVLLAYAPR-EIQDHVLRTERKRFTSATLVNRSSLKQAIAKVLKTGH 187 G R PLY GA + +L++ PR EI+ ++ +TE S T+ + L Q I ++ G+ Sbjct: 127 IGRRSPLYAGACARSILSFLPREEIEAYIKQTELISIGSGTITDPEKLLQEIDASVQNGY 186 Query: 188 AVSYGEMSADSVAIAAPVFNAKAEVMAALSVAGPASRIRDEDVAATAGMLREAARQLS 245 VSY E+ + AI AP+FN + +V A +S+AG +R ++ + +++AA Q+S Sbjct: 187 TVSYSELENYTAAIGAPIFNHERQVAAGISIAGFEARFTEDRLPYLTEKVKDAALQIS 244 >BH2137 [K] COG1414 Transcriptional regulator Bha Bacillus halodurans Length = 251 Score = 118 bits (295), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/248 (27%), Positives = 133/248 (53%), Gaps = 2/248 (0%) Query: 6 IDAVEETLGLLLLVAQCP-GLGVTELSLRSGMTKARAFRMLYTLEKNGLVCRDNQAPIYG 64 + +V+ L ++ LV++ GLGVT+++ + +TK+ A+++L TL ++G + +D + Y Sbjct: 2 VKSVDRALTIISLVSEHKQGLGVTDVAAKLSLTKSSAYKLLATLVEHGFIEQDEETKKYR 61 Query: 65 LGYNALYLGVAAEGQISLARLGKKYLRQIGIACNESVQMRIRDGLESVCIARWESFEPIR 124 LGY L L I + R + +L Q+ NE V + + D E V I + E + +R Sbjct: 62 LGYRYLELSATLLESIDIRRQARPFLEQLEATTNEVVHLVLYDQGEMVYIDKLEGTKTLR 121 Query: 125 VQTQPGSRRPLYVGASGKVLLAYAPREIQDHVL-RTERKRFTSATLVNRSSLKQAIAKVL 183 ++ G R P++ + GKV++AY P ++Q ++ R T T+ ++ + + + K+ Sbjct: 122 THSKIGRRAPIHCTSVGKVIMAYLPEKVQISLIERYGLPPHTERTITDKETFMKELEKIR 181 Query: 184 KTGHAVSYGEMSADSVAIAAPVFNAKAEVMAALSVAGPASRIRDEDVAATAGMLREAARQ 243 G+ E IAAP+F+ + + AA+S++GP+ R+ E + ++ ++ Sbjct: 182 LEGYGYEMEENEPGITCIAAPIFDYQGAITAAVSISGPSIRLSKERLHELRPLIIAIGKK 241 Query: 244 LSMNLGYR 251 +S LGY+ Sbjct: 242 ISQRLGYQ 249 >ECs2537 [K] COG1414 Transcriptional regulator Ecs Escherichia coli O157:H7 Length = 263 Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 123/248 (49%), Gaps = 1/248 (0%) Query: 5 TIDAVEETLGLLLLVAQCPGLGVTELSLRSGMTKARAFRMLYTLEKNGLVCRDNQAPIYG 64 ++ +V + G+L + + +G+TELS R M+K+ +R L T++ G V ++ ++ Y Sbjct: 12 SVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGESEKYS 71 Query: 65 LGYNALYLGVAAEGQISLARLGKKYLRQIGIACNESVQMRIRDGLESVCIARWESFEPIR 124 L LG A + L R +R+I E++ + D V I + +S +R Sbjct: 72 LTLKLFELGARALQNVDLIRSADIQMREISRLTKETIHLGALDEDSIVYIHKIDSMYNLR 131 Query: 125 VQTQPGSRRPLYVGASGKVLLAYAPREIQDHVLR-TERKRFTSATLVNRSSLKQAIAKVL 183 + ++ G R PLY A GKVLLA+ R+ +L E KR T T+ + +L + +V Sbjct: 132 MYSRIGRRNPLYSTAIGKVLLAWRDRDEVKQILEGVEYKRSTERTITSTEALLPVLDQVR 191 Query: 184 KTGHAVSYGEMSADSVAIAAPVFNAKAEVMAALSVAGPASRIRDEDVAATAGMLREAARQ 243 + G+ E IA PVF+ V+A LS++ P R +E + ML AAR+ Sbjct: 192 EQGYGEDNEEQEEGLRCIAVPVFDRFGVVIAGLSISFPTLRFSEERLQEYVAMLHTAARK 251 Query: 244 LSMNLGYR 251 +S +GY Sbjct: 252 ISAQMGYH 259 >Z2874 [K] COG1414 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 263 Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 123/248 (49%), Gaps = 1/248 (0%) Query: 5 TIDAVEETLGLLLLVAQCPGLGVTELSLRSGMTKARAFRMLYTLEKNGLVCRDNQAPIYG 64 ++ +V + G+L + + +G+TELS R M+K+ +R L T++ G V ++ ++ Y Sbjct: 12 SVSSVLKVFGILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQEGESEKYS 71 Query: 65 LGYNALYLGVAAEGQISLARLGKKYLRQIGIACNESVQMRIRDGLESVCIARWESFEPIR 124 L LG A + L R +R+I E++ + D V I + +S +R Sbjct: 72 LTLKLFELGARALQNVDLIRSADIQMREISRLTKETIHLGALDEBSIVYIHKIDSMYNLR 131 Query: 125 VQTQPGSRRPLYVGASGKVLLAYAPREIQDHVLR-TERKRFTSATLVNRSSLKQAIAKVL 183 + ++ G R PLY A GKVLLA+ R+ +L E KR T T+ + +L + +V Sbjct: 132 MYSRIGRRNPLYSTAIGKVLLAWRDRDEVKQILEGVEYKRSTERTITSTEALLPVLDQVR 191 Query: 184 KTGHAVSYGEMSADSVAIAAPVFNAKAEVMAALSVAGPASRIRDEDVAATAGMLREAARQ 243 + G+ E IA PVF+ V+A LS++ P R +E + ML AAR+ Sbjct: 192 EQGYGEDNEEQEEGLRCIAVPVFDRFGVVIAGLSISFPTLRFSEERLQEYVAMLHTAARK 251 Query: 244 LSMNLGYR 251 +S +GY Sbjct: 252 ISAQMGYH 259