BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2410.p (459 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1697 [NU] COG1157 Flagellar biosynthesis/type III secretory pa... 429 e-120 YPCD1.40 [NU] COG1157 Flagellar biosynthesis/type III secretory ... 422 e-118 RSp0870 [NU] COG1157 Flagellar biosynthesis/type III secretory p... 389 e-107 mlr6342 [NU] COG1157 Flagellar biosynthesis/type III secretory p... 379 e-105 TM0218 [NU] COG1157 Flagellar biosynthesis/type III secretory pa... 379 e-105 >PA1697 [NU] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase Pae Pseudomonas aeruginosa Length = 440 Score = 429 bits (1103), Expect = e-120, Method: Compositional matrix adjust. Identities = 223/421 (52%), Positives = 298/421 (70%), Gaps = 6/421 (1%) Query: 39 GKVSQVLGTLVEAHMPPVQIGELCHLRDPHVEGPPILAEVVGFTDKAAILSALSPLEGVS 98 G+V+QV GTL++A +P V+IGELC LR+P + +LAEV+GF A+L+ L + GVS Sbjct: 26 GRVTQVTGTLLKAVVPGVRIGELCQLRNPD-QSLALLAEVIGFQQHQALLTPLGEMLGVS 84 Query: 99 SSTIIEPLRRAHSIEVGDHLFGCVLDGFGRWMFRAPAAAENVATWRAMSPVMRDAPKATD 158 S+T + P H + VG+HL G VLDG GR +P A A W PV RDAP+ Sbjct: 85 SNTEVSPTGGMHRVAVGEHLLGQVLDGLGRPFDGSPPA--EPAAW---YPVYRDAPQPMS 139 Query: 159 RPRISVPLATGVRAIDGLLTMGTGQRIGVFAGPGCGKTTLMAAIARGCEAQAIVFGLIGE 218 R I PL+ GVRAIDGLLT G GQR+G+FA G GK+TL+A++ R E V L+GE Sbjct: 140 RRLIERPLSLGVRAIDGLLTCGEGQRMGIFAAAGGGKSTLLASLVRNAEVDVTVLALVGE 199 Query: 219 RGRELNEFLEHELDAELIRKTVVVCATSDRTSMERARAAFTATAIAEAFRDRGMKVLLLV 278 RGRE+ EF+E +L + +R++V+V ATSDR +MERA+A F AT+IAE FRD+G +VLLL+ Sbjct: 200 RGREVREFIESDLGEQGLRRSVLVVATSDRPAMERAKAGFVATSIAEYFRDQGRRVLLLM 259 Query: 279 DSLTRFARAQREIGLAAGEPPARGGFTPSVYTMLPRLIERAGGTPQGSITAMYTVLVDGE 338 DSLTRFARAQREIGLAAGEPP R G+ PSV+ LPRL+ERAG + +GSITA+YTVLV+G+ Sbjct: 260 DSLTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSERGSITALYTVLVEGD 319 Query: 339 SVSDPIGDEAKSLLDGHILLTRKLAEQGHYPAIDVLASISRVMSNVTTREHRKAASHFRE 398 +S+P+ DE +S+LDGHI+L+RKLA HYPAIDVL S+SRVM+ + + R AA RE Sbjct: 320 DMSEPVADETRSILDGHIVLSRKLAAANHYPAIDVLHSVSRVMNQIVDDDQRHAAGRLRE 379 Query: 399 LMARYQEMELLIRLGEYKSGTDPVADRAVKLRAEQLAFLRQDTSTSAPFQPTLDKLMELQ 458 +A+Y+E+ELL+++GEY+ G D ADRA++ +LRQ T ++ + +L L Sbjct: 380 WLAKYEEVELLLKIGEYQKGQDSEADRAIEKIGAIRQWLRQGTHETSDYAQACAQLRSLC 439 Query: 459 A 459 A Sbjct: 440 A 440 >YPCD1.40 [NU] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase Ype Yersinia pestis Length = 439 Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust. Identities = 217/419 (51%), Positives = 293/419 (69%), Gaps = 6/419 (1%) Query: 39 GKVSQVLGTLVEAHMPPVQIGELCHLRDPHVEGPPILAEVVGFTDKAAILSALSPLEGVS 98 G+V+QV GTL++A +P V+IGELC+LR+P + AEV+GF A+L L + G+S Sbjct: 25 GRVTQVTGTLLKAVVPGVRIGELCYLRNPD-NSLSLQAEVIGFAQHQALLIPLGEMYGIS 83 Query: 99 SSTIIEPLRRAHSIEVGDHLFGCVLDGFGRWMFRAPAAAENVATWRAMSPVMRDAPKATD 158 S+T + P H + VG+HL G VLDG G+ P ++ A PV +DAP Sbjct: 84 SNTEVSPTGTMHQVGVGEHLLGQVLDGLGQ-----PFDGGHLPEPAAWYPVYQDAPAPMS 138 Query: 159 RPRISVPLATGVRAIDGLLTMGTGQRIGVFAGPGCGKTTLMAAIARGCEAQAIVFGLIGE 218 R I+ PL+ G+R IDGLLT G GQR+G+FA G GK+TL+A++ R E V LIGE Sbjct: 139 RKLITTPLSLGIRVIDGLLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGE 198 Query: 219 RGRELNEFLEHELDAELIRKTVVVCATSDRTSMERARAAFTATAIAEAFRDRGMKVLLLV 278 RGRE+ EF+E +L E +RK V+V ATSDR SMERA+A F AT+IAE FRD+G +VLLL+ Sbjct: 199 RGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKAGFVATSIAEYFRDQGKRVLLLM 258 Query: 279 DSLTRFARAQREIGLAAGEPPARGGFTPSVYTMLPRLIERAGGTPQGSITAMYTVLVDGE 338 DS+TRFARAQREIGLAAGEPP R G+ PSV+ LPRL+ERAG + +GSITA+YTVLV+G+ Sbjct: 259 DSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQSSKGSITALYTVLVEGD 318 Query: 339 SVSDPIGDEAKSLLDGHILLTRKLAEQGHYPAIDVLASISRVMSNVTTREHRKAASHFRE 398 +++P+ DE +S+LDGHI+L+RKLA HYPAIDVL S SRVM+ + ++EH+ A R Sbjct: 319 DMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQIVSKEHKTWAGDLRR 378 Query: 399 LMARYQEMELLIRLGEYKSGTDPVADRAVKLRAEQLAFLRQDTSTSAPFQPTLDKLMEL 457 L+A+Y+E+ELL+++GEY+ G D AD+A++ +L Q T + F TL+ L L Sbjct: 379 LLAKYEEVELLLQIGEYQKGQDKEADQAIERMGAIRGWLCQGTHELSHFNETLNLLETL 437 >RSp0870 [NU] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase Rso Ralstonia solanacearum Length = 439 Score = 389 bits (998), Expect = e-107, Method: Compositional matrix adjust. Identities = 210/406 (51%), Positives = 278/406 (68%), Gaps = 8/406 (1%) Query: 38 FGKVSQVLGTLVEAHMPPVQIGELCHLRDPHVEGPPIL-AEVVGFTDKAAILSALSPLEG 96 FGKV +V GTL+ V++GELC L + +G + EVVGF++ A+++ S + G Sbjct: 23 FGKVVEVTGTLLRVGGVDVRLGELCTLTE--ADGTVMQEGEVVGFSEHFALVAPFSGVTG 80 Query: 97 VSSSTIIEPLRRAHSIEVGDHLFGCVLDGFGRWMFRAPAAAENVATWRAMSPVMRDAPKA 156 +S ST + P RA S+ +G L G VLDG GR PA PV +AP Sbjct: 81 LSRSTRVVPSGRALSVGIGPGLLGRVLDGLGR-----PADGGPPLDVVEYVPVFANAPDP 135 Query: 157 TDRPRISVPLATGVRAIDGLLTMGTGQRIGVFAGPGCGKTTLMAAIARGCEAQAIVFGLI 216 R + PLATGVR IDGL T+ GQR+G+FA G GK+TLM ARG E V LI Sbjct: 136 MTRRLVEHPLATGVRVIDGLATLAEGQRMGIFAPAGVGKSTLMGMFARGTECDVNVIVLI 195 Query: 217 GERGRELNEFLEHELDAELIRKTVVVCATSDRTSMERARAAFTATAIAEAFRDRGMKVLL 276 GERGRE+ EF+E L E +R++VVVCATSDR+++ERA+AA+ TA+AE FRD+G++VLL Sbjct: 196 GERGREVREFIEQILGEEGMRRSVVVCATSDRSAVERAKAAYVGTAVAEYFRDQGLRVLL 255 Query: 277 LVDSLTRFARAQREIGLAAGEPPARGGFTPSVYTMLPRLIERAGGTPQGSITAMYTVLVD 336 ++DSLTRFARAQREIGLAAGEPP R GF PSV+ LPRL+ERAG + GSITA+YTVL + Sbjct: 256 MMDSLTRFARAQREIGLAAGEPPTRRGFPPSVFAELPRLLERAGMSAAGSITALYTVLAE 315 Query: 337 GESVSDPIGDEAKSLLDGHILLTRKLAEQGHYPAIDVLASISRVMSNVTTREHRKAASHF 396 ES +DP+ +E + +LDGH++L+R +A + YPAID+L S+SRVM+ V R+H AA Sbjct: 316 DESGNDPVAEEVRGILDGHLILSRDIAARNRYPAIDILNSLSRVMTQVMPRDHCDAAGRM 375 Query: 397 RELMARYQEMELLIRLGEYKSGTDPVADRAVKLRAEQLAFLRQDTS 442 R+L+A+Y E+E L+++GEYK G+DPVAD AV+ +FLRQ T Sbjct: 376 RQLLAKYNEVETLLQMGEYKEGSDPVADAAVQWNDWMESFLRQRTD 421 >mlr6342 [NU] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase Mlo Mesorhizobium loti Length = 452 Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust. Identities = 203/421 (48%), Positives = 276/421 (65%), Gaps = 6/421 (1%) Query: 39 GKVSQVLGTLVEAHMPPVQIGELCHLRDPHVEGPPILAEVVGFTDKAAILSALSPLEGVS 98 G++++ +GTLV A +P +IGELC L+DP G + AEV+G D +L+ + L G+S Sbjct: 38 GRITRAVGTLVHAVLPDTRIGELCLLQDPRT-GLSLEAEVIGLLDDGVLLTPIGDLVGLS 96 Query: 99 SSTIIEPLRRAHSIEVGDHLFGCVLDGFGRWMFRAPAAAENVATWRAMSPVMRDAPKATD 158 S + R + VG+ L G V+D R P + P+ AP Sbjct: 97 SRAEVVATGRMREVPVGNDLLGRVIDSRCR-----PLDGKGQIETTETRPLHGRAPNPMT 151 Query: 159 RPRISVPLATGVRAIDGLLTMGTGQRIGVFAGPGCGKTTLMAAIARGCEAQAIVFGLIGE 218 R I PL GVR +DGLLT G GQRIG++ PG GK+TL++ I +G A ++ LIGE Sbjct: 152 RRMIERPLPLGVRVLDGLLTCGEGQRIGIYGEPGGGKSTLLSQIVKGAAADVVIVALIGE 211 Query: 219 RGRELNEFLEHELDAELIRKTVVVCATSDRTSMERARAAFTATAIAEAFRDRGMKVLLLV 278 RGRE+ EF+E L E +R+ VVV TSDR++++RA+ A ATA+AE FR++G++V L++ Sbjct: 212 RGREVREFIERHLGEEGLRRAVVVVETSDRSAVQRAQCAPMATALAEYFREQGLRVALML 271 Query: 279 DSLTRFARAQREIGLAAGEPPARGGFTPSVYTMLPRLIERAGGTPQGSITAMYTVLVDGE 338 DSLTRF RA REIGLAAGEPP R GF PSV++MLP L+ERAG + +GSITA YTVLV+G+ Sbjct: 272 DSLTRFCRAMREIGLAAGEPPTRRGFPPSVFSMLPGLLERAGMSERGSITAFYTVLVEGD 331 Query: 339 SVSDPIGDEAKSLLDGHILLTRKLAEQGHYPAIDVLASISRVMSNVTTREHRKAASHFRE 398 DPI +E++ +LDGH++L+R +A + H+PAIDVL S SRVM V +R HRKAAS FRE Sbjct: 332 GTGDPIAEESRGILDGHVVLSRAIAARSHFPAIDVLQSRSRVMDAVVSRTHRKAASFFRE 391 Query: 399 LMARYQEMELLIRLGEYKSGTDPVADRAVKLRAEQLAFLRQDTSTSAPFQPTLDKLMELQ 458 L++R+ E E LI +GEYK G DP+ DRAV+ E FLRQ + F+ T+ + L Sbjct: 392 LLSRHAETEFLINVGEYKQGGDPLTDRAVESIDELREFLRQSEDEISGFEETVAWMSRLT 451 Query: 459 A 459 A Sbjct: 452 A 452 >TM0218 [NU] COG1157 Flagellar biosynthesis/type III secretory pathway ATPase Tma Thermotoga maritima Length = 438 Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust. Identities = 196/422 (46%), Positives = 284/422 (67%), Gaps = 14/422 (3%) Query: 39 GKVSQVLGTLVEAHMPPVQIGELCHLRDPHVEGPPILAEVVGFTDKAAILSALSPLEGVS 98 G+V++V+G VE+ P +GE+C + + G LAEVVGF +++ IL P E VS Sbjct: 22 GRVTRVVGLTVESKGPDAFLGEMCKISLQN--GKNALAEVVGFREESVILM---PYEDVS 76 Query: 99 SSTI-IEPLRRAHSIEVG--DHLFGCVLDGFGRWMFRAPAAAENVATWRAMSPVMRDAPK 155 + E +R +EVG + G V DG GR + P E+ P++ + P Sbjct: 77 GLKMGCEVIRTNKVLEVGVSRKMIGRVFDGLGRPIDGKPFVPED------RYPLINNPPN 130 Query: 156 ATDRPRISVPLATGVRAIDGLLTMGTGQRIGVFAGPGCGKTTLMAAIARGCEAQAIVFGL 215 R RI PL G+R+IDG +T+G GQRIG+FAG G GK+TL+ IAR A V L Sbjct: 131 PLKRRRIKDPLPVGIRSIDGFITIGKGQRIGIFAGSGVGKSTLLGMIARNTTADINVLAL 190 Query: 216 IGERGRELNEFLEHELDAELIRKTVVVCATSDRTSMERARAAFTATAIAEAFRDRGMKVL 275 IGERGRE+ EF+E +L E ++++++V +TSD+ ++ R ++ TAT+IAE FRD G VL Sbjct: 191 IGERGREVREFIERDLGEEGLKRSILVVSTSDQPALARVKSLLTATSIAEFFRDLGYDVL 250 Query: 276 LLVDSLTRFARAQREIGLAAGEPPARGGFTPSVYTMLPRLIERAGGTPQGSITAMYTVLV 335 L+VDSLTR+A AQRE+GLA GEPP G+ PSV+ LP+++ERAG + +GSITA+YTVLV Sbjct: 251 LMVDSLTRWAMAQREVGLAVGEPPTTRGYPPSVFAGLPKILERAGNSDKGSITAIYTVLV 310 Query: 336 DGESVSDPIGDEAKSLLDGHILLTRKLAEQGHYPAIDVLASISRVMSNVTTREHRKAASH 395 + + ++PI D +S++DGHI+L+R+LAE HYPA+DVLAS+SR+M+++ T EHR+AA+ Sbjct: 311 EADDFNEPISDTVRSIVDGHIILSRRLAESNHYPAVDVLASVSRLMNDIVTEEHREAANR 370 Query: 396 FRELMARYQEMELLIRLGEYKSGTDPVADRAVKLRAEQLAFLRQDTSTSAPFQPTLDKLM 455 R LM+ Y+ + LI +G YKSGT+P+ D+AV+++ E +FL+Q A F+ TL KL+ Sbjct: 371 LRSLMSAYESAKDLIEIGAYKSGTNPLVDKAVEMKDEIDSFLKQGVFEKASFEETLQKLL 430 Query: 456 EL 457 +L Sbjct: 431 DL 432