BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2406.p (219 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1693 [U] COG4790 Type III secretory pathway, component EscR Pa... 179 4e-45 STM1419 [U] COG4790 Type III secretory pathway, component EscR S... 172 5e-43 RSp0860 [U] COG4790 Type III secretory pathway, component EscR R... 172 7e-43 mlr8766 Non COG 171 2e-42 YPO0270 [U] COG4790 Type III secretory pathway, component EscR Y... 169 3e-42 >PA1693 [U] COG4790 Type III secretory pathway, component EscR Pae Pseudomonas aeruginosa Length = 217 Score = 179 bits (454), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 86/202 (42%), Positives = 130/202 (64%), Gaps = 10/202 (4%) Query: 21 IPLLVVTTTSFLKISLVLLVLRNAIGVQQVPPTLAIYGISLALSVFIMAP----TVQEIG 76 +P + V TSF+K+++V +LRNA+GVQQ+PP +A+YG+++ LS+++MAP T + Sbjct: 20 VPFIAVMATSFIKMTVVFSLLRNALGVQQIPPNMAMYGLAIILSLYVMAPVGFATRDYLR 79 Query: 77 VHALQMDSSQVSSRTTPLLVKAQESFEPLRKFMMKVSRPEQRELFLASARKLWPKDVAKE 136 H + + S R E P R F+ + + + F+ S R++WP + A+ Sbjct: 80 NHDVSLSDSASVERFL------DEGMAPYRNFLKRQIQEREHTFFMESTRQVWPSEYAER 133 Query: 137 ARPSDALVLIPAFVVSELQAGYEIGFLIYIPFVIIDLLISNLLMALGMQQVSPQTITIPL 196 P L+L+PAF VSEL +EIGFLIY+PF+ IDL+ISN+L+A+GM VSP TI++P Sbjct: 134 LDPDSLLILLPAFTVSELTRAFEIGFLIYLPFIAIDLIISNILLAMGMMMVSPMTISLPF 193 Query: 197 KLLLFTLVAGWGKLLNALALSY 218 KLLLF L+ GW +L + L +SY Sbjct: 194 KLLLFVLLDGWARLTHGLVISY 215 >STM1419 [U] COG4790 Type III secretory pathway, component EscR Sty Salmonella typhimurium LT2 Length = 215 Score = 172 bits (436), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 90/207 (43%), Positives = 134/207 (64%), Gaps = 7/207 (3%) Query: 14 LLALLALIPLLVVTTTSFLKISLVLLVLRNAIGVQQVPPTLAIYGISLALSVFIMAPTVQ 73 +L LL+++PL++V TSFLK+++V +LRNA+G+QQVPP +A+YG++L LS+FIM PT+ Sbjct: 13 ILFLLSILPLIIVMGTSFLKLAVVFSILRNALGIQQVPPNIALYGLALVLSLFIMGPTL- 71 Query: 74 EIGVHALQMDSSQVSSRTTPLLVKAQES--FEPLRKFMMKVSRPEQRELFLASARKLWPK 131 A++ V P +S P R+F+ K S ++ F ++ WP+ Sbjct: 72 ----LAVKERWHPVQVAGAPFWTSEWDSKALAPYRQFLQKNSEEKEANYFRNLIKRTWPE 127 Query: 132 DVAKEARPSDALVLIPAFVVSELQAGYEIGFLIYIPFVIIDLLISNLLMALGMQQVSPQT 191 D+ ++ +P L+LIPAF VS+L + IG LIY+PF+ IDLLISN+L+A+GM VSP T Sbjct: 128 DIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLIYLPFLAIDLLISNILLAMGMMMVSPMT 187 Query: 192 ITIPLKLLLFTLVAGWGKLLNALALSY 218 I++P KLL+F L GW L L S+ Sbjct: 188 ISLPFKLLIFLLAGGWDLTLAQLVQSF 214 >RSp0860 [U] COG4790 Type III secretory pathway, component EscR Rso Ralstonia solanacearum Length = 217 Score = 172 bits (435), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 90/225 (40%), Positives = 144/225 (64%), Gaps = 16/225 (7%) Query: 1 MLNNQFDVVSFSILLALLALIPLLVVTTTSFLKISLVLLVLRNAIGVQQVPPTLAIYGIS 60 M N +F S ++ +AL+P + TS+ KI +VL +LRNA+GVQQVPP + + GI+ Sbjct: 1 MQNVEF--ASLIVMAVAIALLPFAAMVVTSYTKIVVVLGLLRNALGVQQVPPNMVLNGIA 58 Query: 61 LALSVFIMAPTVQEIGVHALQMDSSQVS-------SRTTPLLVKAQESFEPLRKFMMKVS 113 + +S F+MAP +G+ A+Q Q++ ++ PLL A+ +P R+F+ K + Sbjct: 59 MIVSCFVMAP----VGMEAMQRAHVQINAQGGTNITQVMPLLDAAR---DPFREFLNKHT 111 Query: 114 RPEQRELFLASARKLWPKDVAKEARPSDALVLIPAFVVSELQAGYEIGFLIYIPFVIIDL 173 ++ F+ SA++LWP A + + D +VL PAF ++EL + + IGFL+Y+ F++IDL Sbjct: 112 NAREKAFFMRSAQQLWPPAKAAQLKDDDLIVLAPAFTLTELTSAFRIGFLLYLAFIVIDL 171 Query: 174 LISNLLMALGMQQVSPQTITIPLKLLLFTLVAGWGKLLNALALSY 218 +I+NLLMALG+ QV+P + IP KLLLF ++ GW L++ L +Y Sbjct: 172 VIANLLMALGLSQVTPSNVAIPFKLLLFVVMDGWSVLIHGLVNTY 216 >mlr8766 Non COG Length = 221 Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 79/190 (41%), Positives = 131/190 (68%), Gaps = 4/190 (2%) Query: 30 SFLKISLVLLVLRNAIGVQQVPPTLAIYGISLALSVFIMAPTVQEIGVHALQMDSSQVSS 89 +F+K+S+VL ++RNA+G Q +PP +A+Y ++L L++F+ AP V++ +M ++ Sbjct: 30 AFVKVSVVLFLVRNALGTQTIPPNIALYAVALILTMFLSAPVVEQT---YDRMTDPKLHY 86 Query: 90 RTTPLLVKAQES-FEPLRKFMMKVSRPEQRELFLASARKLWPKDVAKEARPSDALVLIPA 148 +T V A +S EPLR + K + EQR+ FL+S K+WP ++ +A D +L+P+ Sbjct: 87 QTFDDWVSAAKSGSEPLRDHLKKFTNEEQRQFFLSSTEKVWPAEMRAKATVDDLSILVPS 146 Query: 149 FVVSELQAGYEIGFLIYIPFVIIDLLISNLLMALGMQQVSPQTITIPLKLLLFTLVAGWG 208 F++SEL+ +EIGFL+Y+PF++IDL+++ +LMA+GM VSP I++P KL +F + GW Sbjct: 147 FLISELKRAFEIGFLLYLPFIVIDLIVTTILMAMGMSMVSPTLISVPFKLFVFVAIDGWS 206 Query: 209 KLLNALALSY 218 KL++ L LSY Sbjct: 207 KLMHGLVLSY 216 >YPO0270 [U] COG4790 Type III secretory pathway, component EscR Ype Yersinia pestis Length = 216 Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 91/220 (41%), Positives = 146/220 (66%), Gaps = 7/220 (3%) Query: 1 MLNNQFDVVSFSILLALLALIPLLVVTTTSFLKISLVLLVLRNAIGVQQVPPTLAIYGIS 60 +LN+ + +++ LL +L+++PLLVV T+FLK+S+V +LRNA+GVQQVPP +AIYG++ Sbjct: 3 LLNSSYQLIA---LLFMLSVLPLLVVMGTAFLKLSVVFSLLRNALGVQQVPPNIAIYGLA 59 Query: 61 LALSVFIMAPTVQEIGVHALQMDSSQVSSRTTPLLVK-AQESFEPLRKFMMKVSRPEQRE 119 L L++FIMAP + V A ++ + ++S+ L + Q + P R F+ + + EQ Sbjct: 60 LVLTIFIMAPV--GLDVQA-RLQNEELSNDIGALAHQIDQNALVPYRDFLQRNTDIEQVT 116 Query: 120 LFLASARKLWPKDVAKEARPSDALVLIPAFVVSELQAGYEIGFLIYIPFVIIDLLISNLL 179 F + WP+ +P L+L+PAF +S+L ++IG L+++PFV IDL++SN+L Sbjct: 117 FFNDIVQNKWPERYRDSVKPDSLLILMPAFTLSQLNEAFKIGLLLFLPFVAIDLIVSNIL 176 Query: 180 MALGMQQVSPQTITIPLKLLLFTLVAGWGKLLNALALSYV 219 +A+GM VSP T+++P KLL+F LV GW +L L SY+ Sbjct: 177 LAMGMMMVSPMTLSLPFKLLVFVLVDGWSLVLGQLVGSYL 216