BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2394.p (574 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Cj1474c [NU] COG1450 Type II secretory pathway, component PulD C... 73 1e-12 VC0402 [NU] COG1450 Type II secretory pathway, component PulD Vc... 63 2e-09 VC0831 Non COG 55 5e-07 CT572 [NU] COG1450 Type II secretory pathway, component PulD Ctr... 53 2e-06 XF1527 [NU] COG1450 Type II secretory pathway, component PulD Xf... 48 6e-05 >Cj1474c [NU] COG1450 Type II secretory pathway, component PulD Cje Campylobacter jejuni Length = 472 Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 85/311 (27%), Positives = 138/311 (44%), Gaps = 34/311 (10%) Query: 280 KLSVYSGIENAIKVMLSPYGKV------LASPATGAITVVDTPDSLDKIAAYIDGENKAL 333 K + IE I V+L + + +P G I V T L + Y+ L Sbjct: 154 KFDFWQNIEKEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRL 213 Query: 334 SRQIAINVTVLSVSLSHSDEYGINWGAVYNSLNRNFGISNSFTPASPGSGNFTA--GIVG 391 +Q+ I+V++L+VSL+ S GINW LN NSF G G F G+ Sbjct: 214 KKQVIIDVSILAVSLNESHSSGINWQNFNIGLNSQVNNENSFIQFQNGQG-FVKNLGLRA 272 Query: 392 SSKFSGTTAVIDALSEQGKVRRQTTASVVTLNNQPVPVQVARQTSYLQSSQTSIVAQVGT 451 + F ++I+ LS+ GK + ++ LNNQ + V +Y Q ++S + GT Sbjct: 273 NLNFD---SIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINY-QVKESSKGTENGT 328 Query: 452 TTTLIPG--VVTAGFNMSILPHVLTNGTVMLQFSTDISTLR----GIRQIESNGSRIESP 505 T + + G ++ILP + +G +ML+ + +S + RQ E R +P Sbjct: 329 TVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKE---PRTIAP 385 Query: 506 ELDTRNFLQRVAMKSNETLIISGFEQTDDNLDYKGVGTPRNFL-----LGGGVNGQ--NN 558 + + V +++N+TLI+ G D + + + NFL LG G+ N+ Sbjct: 386 DTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSI----NFLSKIPILGSLFKGEVLNS 441 Query: 559 KEI-IVVLITP 568 K IV +ITP Sbjct: 442 KATEIVFIITP 452 >VC0402 [NU] COG1450 Type II secretory pathway, component PulD Vch Vibrio cholerae Length = 559 Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 38/264 (14%) Query: 287 IENAIKVMLSPYG--KVLASPATGAITVVDTPDSLDKIAAYIDGENKALSRQIAINVTVL 344 +E A+ +L G V+ +P G +T+ PD + ++ ++ + + RQ+ + +L Sbjct: 226 LEKAVAQLLGGSGGQTVIVNPQAGVLTLRAYPDEIRQVNEFLGISQQRMHRQVILEAKIL 285 Query: 345 SVSLSHSDEYGINWGAVYNSLNRNFGI-SNSFTPASPGS------------GNFTAG--- 388 V+LS + GINW ++S N+ I S S T S G+ GN G Sbjct: 286 EVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPGLDAIGNLLGGQSN 345 Query: 389 -IVGSSKFSGTTAVIDALSEQGKVRRQTTASVVTLNNQPVPVQVARQTSYLQSSQTSIV- 446 ++ S F AVI ++ QG + ++ V NNQ ++V Y+ + +S+V Sbjct: 346 VVISSGSFD---AVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYV-TDLSSVVG 401 Query: 447 ----AQVGTTTTLIPGVVTAGFNMSILPHVLTNGTVMLQFS-TDISTLRGIRQIESNGSR 501 AQ TL P +G ++ + P + G V+L I + ++I Sbjct: 402 TGDNAQASPDITLTP--FFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEE 459 Query: 502 IESPELDTRNFLQRVAMKSNETLI 525 IE P L R +++ ++++I Sbjct: 460 IELP-------LARSSIRESDSVI 476 >VC0831 Non COG Length = 489 Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 83/386 (21%), Positives = 158/386 (40%), Gaps = 53/386 (13%) Query: 191 GSLKGLLDTAAARFGVSWKY-VDGTIQFFHTESRNFQINAIPGDSTFTATVTSGATSTGG 249 G L G D ++ + + +++ + ++ +H +++ F + D+ F++++ G TS Sbjct: 128 GPLAGFFDYLSSAYNMHFEFGHNNLVKAYHYKNQVFNLQQYFDDNKFSSSMQIGGTS--- 184 Query: 250 VSGGGSSGGGSSSSGSAVSANNSQNTGVASKLSVYSGIENAIKVMLSPYGKVLASPATGA 309 G+S G ++ +A+ +N+ + I+ + L GK Sbjct: 185 ----GTSSGLKGTADTAIESNS------------WEKIDEFLSASLGETGKFTIFEDYSL 228 Query: 310 ITVVDTPDSLDKIAAYIDGENKALSRQIAINVTVLSVSLSHSDEYGINWGAVYNSLNRNF 369 +TV PD + + D QIA++ V+S+S N L F Sbjct: 229 VTVKARPDKFLLLHTFFDKLINESKMQIAVDYRVVSLSEER-----------LNQLAAKF 277 Query: 370 GISNS--FTPASPGSGNFTAGIVG---SSKFSGTTAVIDALSEQGKVRRQTTASVVTLNN 424 GI N+ ++ S + VG + + +A +DA+ + + + N Sbjct: 278 GIENAGKYSITSDMVDAISLSQVGGGLGASYRSASARLDAVVNELSQEVMHEGHFIGIPN 337 Query: 425 QPVPVQVARQTSYLQSSQTSIVAQVG--TTTTLIPGVVTAGFNMSILPHVLTNGTVMLQF 482 + +P+ V + Y+ S +T+ T T + +VT GF+M ++P +L +G + Q Sbjct: 338 RVMPLNVTTNSKYISSIETTKDTNTDEETRTVKVSDLVT-GFSMMVMPKILDDGRI--QI 394 Query: 483 STDISTLRGIRQIESNGSR--IESPELDTRNFLQRVAMKSNETLIISGFEQTDDNLDYKG 540 S+ S +Q+ S G+ I P +D + V M E + F+ DN Sbjct: 395 SSGFSR----KQLVSIGTAQGITLPTVDENESMNTVTMNPGEVRLAMLFK---DNYIQNS 447 Query: 541 VGTPRNFLLGGGVNGQNNKEIIVVLI 566 G LLGGG + + I VL+ Sbjct: 448 NGVQ---LLGGGTENKKSARYIAVLV 470 >CT572 [NU] COG1450 Type II secretory pathway, component PulD Ctr Chlamydia trachomatis Length = 760 Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 88/349 (25%), Positives = 142/349 (40%), Gaps = 72/349 (20%) Query: 212 DGTIQFFHTESRN--------FQINAIPGDSTFTATVTSGATSTGGVSGGGSSGGGSSSS 263 D T+ ++H + + Q++ I + F A S + TG VS S GSSS+ Sbjct: 360 DKTVFWYHVKHSDPQELAALLSQVHDIFSNGAFGA---SSSCDTGVVS----SKAGSSSN 412 Query: 264 GSAVSANNSQNTGVASKLSVYSGIENAIKVMLSPYGKVLASPATGAITVVDTPDSLDKIA 323 G AV + S + V E + K YG +A TG + +V ++L KI Sbjct: 413 GLAVHIDTSLGSSVK---------EGSAK-----YGSFIADSKTGTLIMVIEKEALPKIK 458 Query: 324 AYIDGENKAL---SRQIAINVTVLSVSLSHSDEYGINWGAVYNSLNRNFGISNSFTPASP 380 + K L + + I V + LS+ + G+N + + + + + + AS Sbjct: 459 MLL----KKLDVPKKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQG--TQAVSWASG 512 Query: 381 GSGNF-----TAGIVGSSKFSGTTAVIDALSEQGKVRRQTTASVVTLNNQPVPVQVARQT 435 G F GIV S F+ L Q VR + SVVT+N P + + + Sbjct: 513 GILEFLFKGGAKGIVPSYDFA-----YQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM 567 Query: 436 SYLQSSQTSIV----AQVGTTTTLIPGVVTAGFNMSILPHVLTNGTVMLQFSTDISTLRG 491 S + SS AQ G ++P V+ G +G + TDI+ Sbjct: 568 SIVVSSDKDKAQYNRAQYGIMIKILP-VINIGEE---------DGKSFITLETDIT---- 613 Query: 492 IRQIESNG-SRIESPELDTRNFLQRVAMKSNETLIISGFE--QTDDNLD 537 +S G + + P++ RN +V ++ ET+II G QT D+ D Sbjct: 614 ---FDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRD 659 >XF1527 [NU] COG1450 Type II secretory pathway, component PulD Xfa Xylella fastidiosa 9a5c Length = 775 Score = 47.8 bits (112), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 70/289 (24%), Positives = 120/289 (41%), Gaps = 34/289 (11%) Query: 310 ITVVDTPDSLDKIAAYIDGENKALSRQIAINVTVLSVSLSHSDEYGINW----------- 358 + V TP + I I+ + + Q+ I V VSL++ YG+NW Sbjct: 459 LLVRATPQAWRSIRDVIE-KLDVMPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAAD 517 Query: 359 -GAVYNSLNRNFGISNSFTPASPGSG-NFTAGIVGSSKFSGT------TAVIDALSEQGK 410 S G+ A+ SG AG V S+ + T A+I+AL + + Sbjct: 518 AADNGASNGTGIGLGAGLPSAAGRSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQ 577 Query: 411 VRRQTTASVVTLNNQPVPVQVARQTSYLQSSQTSIVAQVGTTTTLIP-GVVTAGFNMSIL 469 VR T SV NN + V + + + TSI +G+ +T + G + + Sbjct: 578 VRLLQTPSVFVRNNAEATLNVG---ARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVR 634 Query: 470 PHVLTNGTVMLQFSTDISTLRGIRQIESNGSRI------ESPELDTRNFLQRVAMKSNET 523 P V +G V L ++ST + S+ S + +++TR A++S +T Sbjct: 635 PRVTKDGMVFLDIVQEVSTPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDT 694 Query: 524 LIISGFEQTDDNLDYKGVGTPRNFLLGGGVNG----QNNKEIIVVLITP 568 ++++G ++ GV + GG+ G NN+ I+VL+TP Sbjct: 695 IMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRREIIVLLTP 743