BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2389.p         (189 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.06c [U] COG5096 Vesicle coat complex, various subunits S...    33   0.51 
RP103 [U] COG3451 Type IV secretory pathway, VirB4 components Rp...    31   1.7  
VNG1006H Non COG                                                       31   1.8  
RC0141 [U] COG3451 Type IV secretory pathway, VirB4 components R...    31   1.9  
SMc01292 [J] COG0098 Ribosomal protein S5 Sme Sinorhizobium meli...    30   2.2  

>SPBC2G2.06c [U] COG5096 Vesicle coat complex, various subunits Spo
           Schizosaccharomyces pombe
          Length = 677

 Score = 32.7 bits (73), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 73  AVRKLYIGQSYPTSSLVPSLLLANAIPNTLARPTNTTLSNSWGGAVTIVGTTTGFTITYN 132
            + KLY   SY    +V S  L + +   L+  ++  ++NS    + IV ++TGF +T++
Sbjct: 145 GIAKLY---SY-DKKMVESSGLIDHLKEMLSDESSVVVANSLAALMNIVNSSTGFKLTFS 200

Query: 133 AVPQDVCVSMISGASGWTQI 152
               +  V  ++  S W Q+
Sbjct: 201 REISNKLVKSLTDCSEWLQV 220


>RP103 [U] COG3451 Type IV secretory pathway, VirB4 components Rpr
           Rickettsia prowazekii
          Length = 805

 Score = 30.8 bits (68), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 105 PTNTTLSNSWGGAVTIVGTTTGFTITYNAVPQDVCVSMISGASG 148
           P      N WG  VT++ TT+G    +N   +DV  ++I G +G
Sbjct: 418 PLGKIRDNHWGEYVTVLDTTSGTPFYFNFHVRDVGHTLIIGPTG 461


>VNG1006H Non COG
          Length = 239

 Score = 30.8 bits (68), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 9/56 (16%)

Query: 3   KSKHI--------HN-RKDHLAIRSDSLLARQQGASLLEGIAYLGIAAIVVLGAVS 49
           K KHI        HN +K+   I  +S   R    SLL+GI ++ I+ I+ +G+VS
Sbjct: 150 KEKHIRRVIGTYGHNLKKNKRVIEVNSSRFRYSLVSLLDGITFMSISGILFIGSVS 205


>RC0141 [U] COG3451 Type IV secretory pathway, VirB4 components Rco
           Rickettsia conorii
          Length = 805

 Score = 30.8 bits (68), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 105 PTNTTLSNSWGGAVTIVGTTTGFTITYNAVPQDVCVSMISGASG 148
           P      N WG  VT++ TT+G    +N   +DV  ++I G +G
Sbjct: 418 PLGKIRDNHWGEYVTVLDTTSGTPFYFNFHVRDVGHTLIIGPTG 461


>SMc01292 [J] COG0098 Ribosomal protein S5 Sme Sinorhizobium meliloti
          Length = 189

 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 9  NRKDHLAIRSDSLLARQQGASLLEGIAYLGIAAIVVLGAVSLLTGAFGSAKANQMTEEVV 68
          NR++  +   D L+A  + A +++G    G AA+VV+G      G FG  KA ++ E   
Sbjct: 14 NREERDSEFVDKLVAINRVAKVVKGGRRFGFAALVVVGDQKGRVG-FGHGKAREVPE--- 69

Query: 69 AIRTA 73
          AIR A
Sbjct: 70 AIRKA 74