BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2379.p         (1605 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Cj0930 [J] COG0012 Predicted GTPase, probable translation factor...    35   1.1  
YNR067c [M] COG5498 Predicted glycosyl hydrolase Sce Saccharomyc...    34   2.6  
Z0255 [S] COG3455 Uncharacterized protein conserved in bacteria ...    34   2.8  
ECs0224 [S] COG3455 Uncharacterized protein conserved in bacteri...    34   2.8  
PA5175 [P] COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) ...    34   3.8  

>Cj0930 [J] COG0012 Predicted GTPase, probable translation factor Cje
           Campylobacter jejuni
          Length = 367

 Score = 35.4 bits (80), Expect = 1.1,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 12/135 (8%)

Query: 758 NNMVARVRD------LLNIFSVEAERMIEGGRDRLEDIEALRRTSVMLKDSVENMRRAIN 811
           N  ++ +R+      ++  F  E    +EGG D L D+E +  T ++L D +E + + I 
Sbjct: 89  NKFLSNIRETEVILHIVRCFDEENITHVEGGVDPLRDVEII-NTELILAD-IEQLSKKIE 146

Query: 812 HLNLEAPRTARTELEQVRAAASF--HEMTPAQQQQHLEEVQRYYQEMIAASDLLSGRA-- 867
            L  EA    +   E +  A S   H         + E+    YQ +I    LLS +   
Sbjct: 147 KLTKEAKANQKGAKESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVI 206

Query: 868 GPADIDQAGPSRMPD 882
             A++D+ G S   D
Sbjct: 207 YGANVDENGISEDND 221


>YNR067c [M] COG5498 Predicted glycosyl hydrolase Sce Saccharomyces
           cerevisiae
          Length = 1117

 Score = 34.3 bits (77), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query: 885 LAASNSIASLPVRIRKATELLMKSFPATYAANPAMTYPTAVSPDFISAPLPHTASPSAPF 944
           L ++ +I ++ VR   AT     SF A+  A+  + YP+  + D +      TASP+ P 
Sbjct: 220 LTSNKTIYTISVRTNAATATGEDSFIASTPASSTLFYPSNSTQDLVQTLASTTASPAYPS 279

Query: 945 ARTE 948
            RT+
Sbjct: 280 NRTQ 283


>Z0255 [S] COG3455 Uncharacterized protein conserved in bacteria EcZ
            Escherichia coli O157:H7 EDL933
          Length = 253

 Score = 34.3 bits (77), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 1057 TPLSVLMVNLMSLHAKTVPHNVYRAVVTDAYYVEQSRQAQARE-------RYGPDAVFIG 1109
            TPL  +++ L +++++T+P +++  VVTD   VEQ  Q Q  E       RY     FI 
Sbjct: 39   TPLLGMVMRLSTMNSQTMPEHLFAQVVTDVQAVEQLLQEQGYEPGVIISFRY-ILCTFID 97

Query: 1110 EGAL 1113
            E AL
Sbjct: 98   EAAL 101


>ECs0224 [S] COG3455 Uncharacterized protein conserved in bacteria Ecs
            Escherichia coli O157:H7
          Length = 253

 Score = 34.3 bits (77), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 8/64 (12%)

Query: 1057 TPLSVLMVNLMSLHAKTVPHNVYRAVVTDAYYVEQSRQAQARE-------RYGPDAVFIG 1109
            TPL  +++ L +++++T+P +++  VVTD   VEQ  Q Q  E       RY     FI 
Sbjct: 39   TPLLGMVMRLSTMNSQTMPEHLFAQVVTDVQAVEQLLQEQGYEPGVIISFRY-ILCTFID 97

Query: 1110 EGAL 1113
            E AL
Sbjct: 98   EAAL 101


>PA5175 [P] COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS)
            3'-phosphatase Pae Pseudomonas aeruginosa
          Length = 273

 Score = 33.9 bits (76), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)

Query: 1254 LEDGAICCHPDTAQMYRYDAARQEMVF--TGGTLNNFHGAPL--EPRED 1298
            L +GA  C+P      ++D A  + V    GG + + HGAP   EPRED
Sbjct: 198  LAEGAADCYPRLTPTSQWDTAAAQGVLEGAGGEVLDLHGAPFTYEPRED 246