BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2369.p (311 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_rbsK [G] COG0524 Sugar kinases, ribokinase family Bsu Bacillu... 110 3e-24 ZyihV [G] COG0524 Sugar kinases, ribokinase family EcZ Escherich... 105 2e-22 ECs4806 [G] COG0524 Sugar kinases, ribokinase family Ecs Escheri... 105 2e-22 STM4024 [G] COG0524 Sugar kinases, ribokinase family Sty Salmone... 104 2e-22 yihV [G] COG0524 Sugar kinases, ribokinase family Eco Escherichi... 101 2e-21 >BS_rbsK [G] COG0524 Sugar kinases, ribokinase family Bsu Bacillus subtilis Length = 293 Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 89/309 (28%), Positives = 148/309 (47%), Gaps = 31/309 (10%) Query: 7 DILTLGDPVADLMLRAALLPPPGGKTLGQWLGIMPGGTTANVACAASRLGMRCAQFGRVG 66 +I +G DL++ + P G LG +PGG AN A AA+RLG + G+VG Sbjct: 3 NICVIGSCSMDLVVTSDKRPKAGETVLGTSFQTVPGGKGANQAVAAARLGAQVFMVGKVG 62 Query: 67 DDPNARLLRDSLVEHGVATHWLSVQPQAASASAVAILAPSGEKSIIYMP------MPAVA 120 DD + ++L +GV T ++ S +A +LA G+ SI+ + PA A Sbjct: 63 DDHYGTAILNNLKANGVRTDYMEPVTHTESGTAHIVLA-EGDNSIVVVKGANDDITPAYA 121 Query: 121 PDEEALKTAVSQSRLVYAMPYDLAELEMVSRLAHAAGTLVAID------LEAAVAPNATE 174 + V + +P + ++ V + H+ + ++ L+ +AT Sbjct: 122 LNALEQIEKVDMVLIQQEIPEET--VDEVCKYCHSHDIPIILNPAPARPLKQETIDHATY 179 Query: 175 MWRRASLADIVFFNESGFCKATGMAPSPQV-LTEALRLGPSEIIVTMGEGGAIGAARTSS 233 + A I+F P++ ++EAL L P+++ +T G+ G +A + Sbjct: 180 LTPNEHEASILF---------------PELTISEALALYPAKLFITEGKQGVRYSAGSKE 224 Query: 234 ARHAAFPVQVVDTTGAGDCFNAAYLSTRLKGQPLSLALRFACAAASCAVSALGARQGLPD 293 +FPV+ VDTTGAGD FNAA+ +G+ + ALRFA AAS +V + GA+ G+P Sbjct: 225 VLIPSFPVEPVDTTGAGDTFNAAFAVALAEGKDIEAALRFANRAASLSVCSFGAQGGMPT 284 Query: 294 QGSVAAILA 302 + V +L+ Sbjct: 285 RNEVEELLS 293 >ZyihV [G] COG0524 Sugar kinases, ribokinase family EcZ Escherichia coli O157:H7 EDL933 Length = 300 Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/293 (30%), Positives = 128/293 (43%), Gaps = 5/293 (1%) Query: 11 LGDPVADLMLRAALLPPPGGKTLGQWLGIMPGGTTANVACAASRLGMRCAQFGRVGDDPN 70 +G V D + LP GK + + + GG A A AA+RLG + GRVGDD Sbjct: 9 VGITVMDRIYYVEGLPTESGKYVARNYTEVGGGPAATAAVAAARLGAQVDFIGRVGDDDT 68 Query: 71 ARLLRDSLVEHGVATHWLSVQPQAASASAVAILAPSGEKSIIYMPMPAVAPDEEALKTA- 129 L L GV T + QA S+ + ++ GE+ II P P + PD E L+ Sbjct: 69 GNSLLAELESWGVNTRYTKRYKQAKSSQSAIMVDAKGERIIINYPSPDLLPDAEWLEEID 128 Query: 130 VSQSRLVYAMPYDLAELEMVSRLAHAAGTLVAIDLEAAVAPNATEMWRRASLADIVFFNE 189 SQ +V A + LA AG + +D + P ++ +L+D F+E Sbjct: 129 FSQWDVVLADVRWHDGAKKAFTLARQAGVMTVLD--GDITPQ--DISELVALSDHAAFSE 184 Query: 190 SGFCKATGMAPSPQVLTEALRLGPSEIIVTMGEGGAIGAARTSSARHAAFPVQVVDTTGA 249 G + TG+ L +A L + VT G G AF V VVDTTGA Sbjct: 185 PGLARLTGVKEMASALKQAQTLTNGHVYVTQGSAGCDWLENGGRQHQPAFKVDVVDTTGA 244 Query: 250 GDCFNAAYLSTRLKGQPLSLALRFACAAASCAVSALGARQGLPDQGSVAAILA 302 GD F+ A G L+ ++RFA A+ + G R G+PD + L+ Sbjct: 245 GDVFHGALAVVLATGGDLAESVRFASGVAASKCTRPGGRAGIPDCDQTRSFLS 297 >ECs4806 [G] COG0524 Sugar kinases, ribokinase family Ecs Escherichia coli O157:H7 Length = 300 Score = 105 bits (261), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/293 (30%), Positives = 128/293 (43%), Gaps = 5/293 (1%) Query: 11 LGDPVADLMLRAALLPPPGGKTLGQWLGIMPGGTTANVACAASRLGMRCAQFGRVGDDPN 70 +G V D + LP GK + + + GG A A AA+RLG + GRVGDD Sbjct: 9 VGITVMDRIYYVEGLPTESGKYVARNYTEVGGGPAATAAVAAARLGAQVDFIGRVGDDDT 68 Query: 71 ARLLRDSLVEHGVATHWLSVQPQAASASAVAILAPSGEKSIIYMPMPAVAPDEEALKTA- 129 L L GV T + QA S+ + ++ GE+ II P P + PD E L+ Sbjct: 69 GNSLLAELESWGVNTRYTKRYKQAKSSQSAIMVDAKGERIIINYPSPDLLPDAEWLEEID 128 Query: 130 VSQSRLVYAMPYDLAELEMVSRLAHAAGTLVAIDLEAAVAPNATEMWRRASLADIVFFNE 189 SQ +V A + LA AG + +D + P ++ +L+D F+E Sbjct: 129 FSQWDVVLADVRWHDGAKKAFTLARQAGVMTVLD--GDITPQ--DISELVALSDHAAFSE 184 Query: 190 SGFCKATGMAPSPQVLTEALRLGPSEIIVTMGEGGAIGAARTSSARHAAFPVQVVDTTGA 249 G + TG+ L +A L + VT G G AF V VVDTTGA Sbjct: 185 PGLARLTGVKEMASALKQAQTLTNGHVYVTQGSAGCDWLENGGRQHQPAFKVDVVDTTGA 244 Query: 250 GDCFNAAYLSTRLKGQPLSLALRFACAAASCAVSALGARQGLPDQGSVAAILA 302 GD F+ A G L+ ++RFA A+ + G R G+PD + L+ Sbjct: 245 GDVFHGALAVVLATGGDLAESVRFASGVAASKCTRPGGRAGIPDCDQTRSFLS 297 >STM4024 [G] COG0524 Sugar kinases, ribokinase family Sty Salmonella typhimurium LT2 Length = 298 Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 88/287 (30%), Positives = 129/287 (44%), Gaps = 5/287 (1%) Query: 8 ILTLGDPVADLMLRAALLPPPGGKTLGQWLGIMPGGTTANVACAASRLGMRCAQFGRVGD 67 I +G V D + LP GGK + + + GG A A AA++LG + GRVGD Sbjct: 4 IACVGITVMDRIYYVEGLPTEGGKYVAKRYTEVGGGPAATAAVAAAKLGAQVDFIGRVGD 63 Query: 68 DPNARLLRDSLVEHGVATHWLSVQPQAASASAVAILAPSGEKSIIYMPMPAVAPDEEALK 127 D L L GV T + QA S+ + ++ GE+ I+ P P + PD + L Sbjct: 64 DDTGNSLLAELESLGVNTRYTRRYTQAMSSQSAIMVDAKGERIIVNYPSPDLLPDADWLN 123 Query: 128 TA-VSQSRLVYAMPYDLAELEMVSRLAHAAGTLVAIDLEAAVAPNATEMWRRASLADIVF 186 SQ +V A + LA AG + +D + P ++ +L+D Sbjct: 124 DIDFSQWDVVLADVRWHDGAKQAFTLARQAGVMTVLD--GDITPQ--DISELVALSDHAA 179 Query: 187 FNESGFCKATGMAPSPQVLTEALRLGPSEIIVTMGEGGAIGAARTSSARHAAFPVQVVDT 246 F+E G + TGM+ + L +A L + VT G G + + F V+VVDT Sbjct: 180 FSEPGLARLTGMSEAIDALKKAQMLTNGHVYVTRGSEGCNWLEKAAVRHQPGFTVEVVDT 239 Query: 247 TGAGDCFNAAYLSTRLKGQPLSLALRFACAAASCAVSALGARQGLPD 293 TGAGD F+ A G + A+RFA A+ + G R G+PD Sbjct: 240 TGAGDVFHGALAFGLASGYAIEEAVRFASGVAALKCTRPGGRAGIPD 286 >yihV [G] COG0524 Sugar kinases, ribokinase family Eco Escherichia coli K12 Length = 300 Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 89/293 (30%), Positives = 127/293 (43%), Gaps = 5/293 (1%) Query: 11 LGDPVADLMLRAALLPPPGGKTLGQWLGIMPGGTTANVACAASRLGMRCAQFGRVGDDPN 70 +G V D + LP GK + + + GG A A AA+RLG + GRVGDD Sbjct: 9 VGITVMDRIYYVEGLPTESGKYVARNYTEVGGGPAATAAVAAARLGAQVDFIGRVGDDDT 68 Query: 71 ARLLRDSLVEHGVATHWLSVQPQAASASAVAILAPSGEKSIIYMPMPAVAPDEEALKTA- 129 L L GV T + QA S+ + ++ GE+ II P P + PD E L+ Sbjct: 69 GNSLLAELESWGVNTRYTKRYNQAKSSQSAIMVDTKGERIIINYPSPDLLPDAEWLEEID 128 Query: 130 VSQSRLVYAMPYDLAELEMVSRLAHAAGTLVAIDLEAAVAPNATEMWRRASLADIVFFNE 189 SQ +V A + LA AG + +D + P ++ +L+D F+E Sbjct: 129 FSQWDVVLADVRWHDGAKKAFTLARQAGVMTVLD--GDITPQ--DISELVALSDHAAFSE 184 Query: 190 SGFCKATGMAPSPQVLTEALRLGPSEIIVTMGEGGAIGAARTSSARHAAFPVQVVDTTGA 249 G + TG+ L +A L + VT G G AF V VVDTTGA Sbjct: 185 PGLARLTGVKEMASALKQAQTLTNGHVYVTQGSAGCDWLENGGRQHQPAFKVDVVDTTGA 244 Query: 250 GDCFNAAYLSTRLKGQPLSLALRFACAAASCAVSALGARQGLPDQGSVAAILA 302 GD F+ A L+ ++RFA A+ + G R G+PD + L+ Sbjct: 245 GDVFHGALAVALATSGDLAESVRFASGVAALKCTRPGGRAGIPDCDQTRSFLS 297