BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2366.p         (148 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2285 Non COG                                                        95   5e-20
XF1945 Non COG                                                         77   9e-15
YPO1331 [E] COG0687 Spermidine/putrescine-binding periplasmic pr...    36   0.024
STM0877 [E] COG0687 Spermidine/putrescine-binding periplasmic pr...    36   0.034
ZpotF [E] COG0687 Spermidine/putrescine-binding periplasmic prot...    34   0.12 

>RSc2285 Non COG
          Length = 143

 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 67/110 (60%), Gaps = 2/110 (1%)

Query: 38  ERALDEGATVMLSLDLSRCRADGTTSRSGKAKGGLTIGAYLVM-DGLLSFSDSHPTVGKN 96
           E AL  G  V  ++DL+RC  D  T+ +G  +GG+T+  Y +  D  LSFSD+H TV  +
Sbjct: 32  EHALSLGKPVTATIDLTRCTGDTATTPAGTTRGGVTVNPYRIQPDNTLSFSDTHFTVRSD 91

Query: 97  GEPLWQFLRYQVKADQTVTFTADMFQLPGYTRIGERISYQCNINEGIRFF 146
           G P+ QFLRY +    T  F++ +F +P YT +  ++SY C + EG++ F
Sbjct: 92  GTPITQFLRYSIDTSGTARFSSYIFAMPAYT-LQSQVSYTCKLGEGVKLF 140


>XF1945 Non COG
          Length = 145

 Score = 77.4 bits (189), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 67/118 (56%), Gaps = 3/118 (2%)

Query: 30  PLSSQAEIERALDEGATVMLSLDLSRCRADGTTSRSGKAKGGLTIGAYLVMDGLLSFSDS 89
           PL+ Q+EI + LD G  V  S+DLS C  +  T  S   +GG  I  Y + + +LSF+++
Sbjct: 28  PLNKQSEIIKVLDNGFPVSFSIDLSNCTPEVGTPPSS-TRGGSPIEGYRLTNDVLSFAEA 86

Query: 90  HPTVGK-NGEPLWQFLRYQVKADQTVTFTADMFQLPGYTRIGERISYQCNINEGIRFF 146
              V +  G+P+ Q +RY V  +  V F A ++ +P + +   + SY C+IN G+ F+
Sbjct: 87  RLVVEQTTGKPIQQVMRYSVYKNGNVHFEAYLYDVPTFVQ-KSKFSYNCSINSGVNFY 143


>YPO1331 [E] COG0687 Spermidine/putrescine-binding periplasmic protein Ype
           Yersinia pestis
          Length = 369

 Score = 36.2 bits (82), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 2/62 (3%)

Query: 62  TSRSGKAKGGLTIGAYLVMDGLLSFSD--SHPTVGKNGEPLWQFLRYQVKADQTVTFTAD 119
           ++R+ +AK G+ +   +  +G L+F D  + PT  KN +  +QFL Y ++ D     +  
Sbjct: 251 SNRAKEAKNGVNVAYSIPKEGALAFFDVFAMPTDAKNQDEAYQFLNYLMRPDVIANISNH 310

Query: 120 MF 121
           +F
Sbjct: 311 VF 312


>STM0877 [E] COG0687 Spermidine/putrescine-binding periplasmic protein Sty
           Salmonella typhimurium LT2
          Length = 370

 Score = 35.8 bits (81), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 63  SRSGKAKGGLTIGAYLVMDGLLSFSD--SHPTVGKNGEPLWQFLRYQVKADQTVTFTADM 120
           +R+ +AK G+ I   +  +G ++F D  + P   KN +  +QFL Y ++ D     +  +
Sbjct: 253 NRAKEAKNGVNISFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVIAHISDHV 312

Query: 121 FQLPGYTRIGERISYQCNINEGI 143
           F           +S Q   N GI
Sbjct: 313 FYANANKEATALVSQQVRDNPGI 335


>ZpotF [E] COG0687 Spermidine/putrescine-binding periplasmic protein EcZ
           Escherichia coli O157:H7 EDL933
          Length = 370

 Score = 33.9 bits (76), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 62  TSRSGKAKGGLTIGAYLVMDGLLSFSD--SHPTVGKNGEPLWQFLRYQVKADQTVTFTAD 119
           ++R+ +AK G+ +   +  +G ++F D  + P   KN +  +QFL Y ++ D     +  
Sbjct: 252 SNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDH 311

Query: 120 MFQLPGYTRIGERISYQCNINEGI 143
           +F           +S +   N GI
Sbjct: 312 VFYANANKAATPLVSAEVRDNPGI 335