BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2357.p (252 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DR1773 Non COG 49 2e-05 DR0535 Non COG 37 0.040 YIL126w_1 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fa... 35 0.14 SMc04085 [E] COG2902 NAD-specific glutamate dehydrogenase Sme Si... 35 0.18 alr2986 [C] COG1413 FOG Nos Nostoc sp. PCC 7120 33 0.78 >DR1773 Non COG Length = 433 Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 86/190 (45%), Gaps = 32/190 (16%) Query: 67 EVRAVAAKHVEVF--YLPRMIDDPDATVRWSVAQR--LPQRQLLMLRQDPDREVRIQVAR 122 +VR+ A+ ++ L R+ D TVR ++ +R LP +L L Q P+ ++R+QVA Sbjct: 244 DVRSALARRPDLSPEVLERLAHDESGTVRRTLLERNDLPDGAILALAQAPEPDLRLQVAS 303 Query: 123 RLHVEQLHQMMGDGDYG--VRLIVAQR--IEPQWLVRMLHDEDREVRRVVAARVGSALLN 178 + D VR I+A R + P+ L R+ DE EVRR G+AL Sbjct: 304 AEELPAAALEALLTDESTDVRTILAVRPDLGPERLARLAADESAEVRR------GAAL-- 355 Query: 179 AMAKDEDAAVRTVVAQRLAPAQLVALCHDPDWRVRYSVAER--IDAAHLGLLADDEDEAV 236 A L P L L DP+ VR ++ R + A + LA D DE V Sbjct: 356 --------------APTLPPELLRQLSADPNAGVRRTLLTRRELPAEVIRELAADPDEGV 401 Query: 237 RTLARQRSGL 246 R L R+GL Sbjct: 402 RLLVAGRAGL 411 Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 9/115 (7%) Query: 137 DYGVRLIVAQR--IEPQWLVRMLHDEDREVRRVVAAR--VGSALLNAMAKDEDAAVRTVV 192 DYGVR +A R + P+ + + D +VR VA R + LL +A+DED VR Sbjct: 86 DYGVRTALAARPGLSPERVTALAGDAGWQVREAVAQRPDLPEPLLRQLAEDEDYDVRKAT 145 Query: 193 AQRL-APAQLV-ALCHDPDWRVRYSVAERIDAA---HLGLLADDEDEAVRTLARQ 242 A R P L+ L DP VR +VA R+D L L + + + TLAR+ Sbjct: 146 ALRPDLPGDLLRTLVTDPHTLVRANVARRLDLPLDCLLSLATGGDPDVLATLARR 200 Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 4/77 (5%) Query: 176 LLNAMAKDEDAAVRTVVAQR--LAPAQLVALCHDPDWRVRYSVAERIDAAH--LGLLADD 231 ++++ + ED VRT +A R L+P ++ AL D W+VR +VA+R D L LA+D Sbjct: 77 VVDSALRHEDYGVRTALAARPGLSPERVTALAGDAGWQVREAVAQRPDLPEPLLRQLAED 136 Query: 232 EDEAVRTLARQRSGLAG 248 ED VR R L G Sbjct: 137 EDYDVRKATALRPDLPG 153 Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 60/117 (51%), Gaps = 8/117 (6%) Query: 113 DREVRIQVARR--LHVEQLHQMMGDGDYGVRLIVAQRIE-PQWLVRML-HDEDREVRRVV 168 D VR +A R L E++ + GD + VR VAQR + P+ L+R L DED +VR+ Sbjct: 86 DYGVRTALAARPGLSPERVTALAGDAGWQVREAVAQRPDLPEPLLRQLAEDEDYDVRKAT 145 Query: 169 AAR--VGSALLNAMAKDEDAAVRTVVAQRL-APAQ-LVALCHDPDWRVRYSVAERID 221 A R + LL + D VR VA+RL P L++L D V ++A R D Sbjct: 146 ALRPDLPGDLLRTLVTDPHTLVRANVARRLDLPLDCLLSLATGGDPDVLATLARRTD 202 Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 107/257 (41%), Gaps = 46/257 (17%) Query: 35 KACVHDRYARRIDRFFAWNPALAKEFLT----HPYFEVRAVAAKHVEVF--YLPRMIDDP 88 A H+ Y R A P L+ E +T ++VR A+ ++ L ++ +D Sbjct: 80 SALRHEDYGVRT--ALAARPGLSPERVTALAGDAGWQVREAVAQRPDLPEPLLRQLAEDE 137 Query: 89 DATVRWSVAQR--LPQRQLLMLRQDPDREVRIQVARRLHV--EQLHQMMGDGDYGVRLIV 144 D VR + A R LP L L DP VR VARRL + + L + GD V + Sbjct: 138 DYDVRKATALRPDLPGDLLRTLVTDPHTLVRANVARRLDLPLDCLLSLATGGDPDVLATL 197 Query: 145 AQRI--------------EP--------------QWLVRMLHDEDREVRRVVAAR--VGS 174 A+R EP WL R D D +VR +A R + Sbjct: 198 ARRTDLPASVREWLAASAEPLVRSAALQAWTVPESWLARAETDADPDVRSALARRPDLSP 257 Query: 175 ALLNAMAKDEDAAVRTVVAQR--LAPAQLVALCH--DPDWRVRYSVAERIDAAHLGLLAD 230 +L +A DE VR + +R L ++AL +PD R++ + AE + AA L L Sbjct: 258 EVLERLAHDESGTVRRTLLERNDLPDGAILALAQAPEPDLRLQVASAEELPAAALEALLT 317 Query: 231 DEDEAVRTLARQRSGLA 247 DE VRT+ R L Sbjct: 318 DESTDVRTILAVRPDLG 334 >DR0535 Non COG Length = 825 Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust. Identities = 60/186 (32%), Positives = 80/186 (43%), Gaps = 19/186 (10%) Query: 50 FAWNPALAKE----FLTHPYFEVRAVAAKH--VEVFYLPRMIDDPD-ATVRWSVAQRLPQ 102 A NPAL +E P + VR+ AA++ E L + DPD T+R VA P Sbjct: 231 VARNPALPREARLGLTVDPDWWVRSAAAENPNAEPEELAALAQDPDHVTIREHVASH-PH 289 Query: 103 RQ---LLMLRQDPDREVRIQVARRLHV--EQLHQMMGDGDYGVR-LIVAQRIEPQWLVRM 156 LL L D D VR+QVAR E L + GD Y +R + A P ++ Sbjct: 290 ASGPTLLALAGDGDHAVRLQVARNPSSPPEALSLLAGDARYAIREAVAAHPYTPSEVLDA 349 Query: 157 LHDEDREVRRVVAARVGSALLNAMAKDEDAA----VRTVVAQRLAPAQ-LVALCHDPDWR 211 L + E + VA + L A A+ + VA + APA+ LV L D R Sbjct: 350 LAQDANERVQFVANLRRAPLSQAQAQQALETRRRNAKLAVAAQQAPAEMLVRLSRDRSPR 409 Query: 212 VRYSVA 217 VR V Sbjct: 410 VRAQVG 415 >YIL126w_1 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Sce Saccharomyces cerevisiae Length = 1210 Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats. Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 44/152 (28%) Query: 91 TVRWSVAQRLPQRQLLMLRQDPDREVRIQVARRLHVEQLHQMMGDGDYGVRLIVAQRIEP 150 TVR +A+ L ++QLL R+ R LH+++++ ++ + +R Sbjct: 300 TVR--LAEELERQQLLEKRKK---------ERNLHLQKINSIID--------FIKERQSE 340 Query: 151 QWLVRMLHDEDREVRRVVAARVGSALLNAMAKDEDAAVRTVVAQRLAPAQLVALCHDPDW 210 QW R+ R R+G++L N M KDE + QRLA Sbjct: 341 QW--------SRQERCFQFGRLGASLHNQMEKDEQKRIERTAKQRLA------------- 379 Query: 211 RVRYSVAERIDAAHLGLLADDEDEAVRTLARQ 242 ++ + A+L LL +D + L RQ Sbjct: 380 ----ALKSNDEEAYLKLLDQTKDTRITQLLRQ 407 >SMc04085 [E] COG2902 NAD-specific glutamate dehydrogenase Sme Sinorhizobium meliloti Length = 1595 Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust. Identities = 22/67 (32%), Positives = 31/67 (46%) Query: 159 DEDREVRRVVAARVGSALLNAMAKDEDAAVRTVVAQRLAPAQLVALCHDPDWRVRYSVAE 218 DEDR +RR V A + N KD + R V+A +L P QL L +R + Sbjct: 725 DEDRILRRYVNAVQSTLRTNYFQKDAEGRPRAVLAFKLDPKQLEGLPEPRPFREIFVYGT 784 Query: 219 RIDAAHL 225 ++ HL Sbjct: 785 EVEGVHL 791 >alr2986 [C] COG1413 FOG Nos Nostoc sp. PCC 7120 Length = 885 Score = 32.7 bits (73), Expect = 0.78, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 20/91 (21%) Query: 150 PQWLVRMLHDEDREVRRVVAARVGS----------ALLNAMAKDEDAAVRTVVAQRLA-- 197 P ++ + D+D VR A +G +L+ A+ D+DA VR+ A L Sbjct: 215 PSLILALQSDKDANVRSTAAFALGRMGGEAKAAIPSLIQALQSDKDANVRSTAANVLGSM 274 Query: 198 --------PAQLVALCHDPDWRVRYSVAERI 220 P+ ++AL D D VR++ A+ + Sbjct: 275 GGEAKAAIPSLILALQSDKDANVRFNAADAL 305