BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2356.p         (98 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll5854 Non COG                                                       104   4e-23
asr1408 Non COG                                                        98   6e-21
Cgl2787 [S] COG5438 Predicted multitransmembrane protein Cgl Cor...    28   4.6  
CAC1701 [T] COG0642 Signal transduction histidine kinase Cac Clo...    28   5.8  
PAB1450 [GEPR] COG0477 Permeases of the major facilitator superf...    28   7.2  

>mll5854 Non COG
          Length = 108

 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 65/88 (73%)

Query: 10 VELDGPPQFSYGEKVRSTKTIRNDGTFAGREIGDILVKKGDIGYVTSIGTFLQQFYIYGI 69
          +E+  PP+F  GE+VR+T+ I+NDGT+ G+EIG+ LV KGD GYV  IGTFLQQFYIY +
Sbjct: 9  IEIRTPPRFMPGERVRATRHIKNDGTYPGKEIGENLVLKGDEGYVRDIGTFLQQFYIYAV 68

Query: 70 EFVEHGYRVGMKGRELQSLDQPVTSGQA 97
          E+V+ G  VGM+ REL SL+   T   A
Sbjct: 69 EWVDRGTVVGMRARELMSLETARTPSSA 96


>asr1408 Non COG
          Length = 95

 Score = 97.8 bits (242), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/88 (53%), Positives = 65/88 (73%), Gaps = 2/88 (2%)

Query: 3  INRDDGRVELDGPPQFSYGEKVRSTKTIRNDGTFAGREIGDILVKKGDIGYVTSIGTFLQ 62
          + RD+   EL+  P +  GEKVR  K I+NDGTF GR++G+IL KKG+IGYV+SIGTFLQ
Sbjct: 1  MQRDEN--ELESEPVYEIGEKVRLRKQIKNDGTFPGRDLGEILAKKGEIGYVSSIGTFLQ 58

Query: 63 QFYIYGIEFVEHGYRVGMKGRELQSLDQ 90
          + YIY + F+E G  VG + +EL+S ++
Sbjct: 59 RSYIYAVHFLEKGIIVGCREKELESAEE 86


>Cgl2787 [S] COG5438 Predicted multitransmembrane protein Cgl
           Corynebacterium glutamicum
          Length = 419

 Score = 28.1 bits (61), Expect = 4.6,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 14  GPPQFSYGEKVRSTKTIRNDG----TFAGREIGDILVKKGDIGYVTSIGTF 60
           G P+FS G+K+R  +T   +G    TFA  + G  L+  G +  + ++G F
Sbjct: 125 GDPEFSEGDKIRMVETPDTNGEIIYTFADYQRGPALIIWG-VVLIVAMGAF 174


>CAC1701 [T] COG0642 Signal transduction histidine kinase Cac Clostridium
           acetobutylicum
          Length = 566

 Score = 28.1 bits (61), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 24/106 (22%), Positives = 46/106 (43%), Gaps = 11/106 (10%)

Query: 2   KINRDDGRVELDGPPQFSYGEKVRSTKTIRNDGTFAGREIGD--ILVKKGDIGYVTSIGT 59
           K++  + RVE+    +  YG  VR +K+++N+  +  +  GD  ++    ++  V     
Sbjct: 93  KLDNHNKRVEVAEARKNGYGYSVRYSKSLKNNIIYYAKVRGDGTVVRTAVELSSVERFEA 152

Query: 60  FLQQFYIYGIEF---------VEHGYRVGMKGRELQSLDQPVTSGQ 96
              +FYIY I            +  Y +    RELQ+    +  G+
Sbjct: 153 RYLKFYIYVIALSIIAAVYLSFKLSYVILNPIRELQNTSSRIAMGE 198


>PAB1450 [GEPR] COG0477 Permeases of the major facilitator superfamily Pab
           Pyrococcus abyssi
          Length = 428

 Score = 27.7 bits (60), Expect = 7.2,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 46  VKKGDI--GYVTSIGTFLQQFYIYGIEFVEHGYRVGM 80
           + KG++  G + S+GT       +GI F+ H +R+G+
Sbjct: 276 LAKGEVLYGLLRSLGTLGSLISAFGIVFIAHKFRIGI 312