BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2337.p         (156 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr5912 Non COG                                                       187   1e-47
all1435 Non COG                                                       128   5e-30
lin1685 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 fami...    31   1.1  
UU481 Non COG                                                          30   2.3  
PAE1576 [CP] COG0651 Formate hydrogenlyase subunit 3/Multisubuni...    29   3.4  

>mlr5912 Non COG
          Length = 159

 Score =  187 bits (474), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 85/148 (57%), Positives = 115/148 (77%)

Query: 5   ATQEAPAAIDSPFVQELIKQWRAQDTHGAWDGKSNADLLAPYIITRELRREIPIIGDPDP 64
           A  +  AA+ SPFV+ L++  RAQDTHG+WDG ++A+LLA +I+++E RR IPIIGDPDP
Sbjct: 9   AVNDDEAALASPFVKCLVRLIRAQDTHGSWDGTADAELLADFIVSKERRRTIPIIGDPDP 68

Query: 65  ETLWRLELFYNAVGLAIERQTGSIATPMMKMSHEGFGRMVLMAGRLVVVNKHLRDVHRFG 124
           + LWRL+ FY AV LAIE ++G +A+PM++MSHEGFGR++  AGRLVV++K +RDVHRFG
Sbjct: 69  DVLWRLDKFYTAVALAIEERSGLMASPMIEMSHEGFGRVLFTAGRLVVLSKTVRDVHRFG 128

Query: 125 FESVDKLAEEGDKIVTAGVEMIRQFPEV 152
           FE+  KLA  G K+V   +  I  +PEV
Sbjct: 129 FETFCKLAAAGTKLVDDAIAAIDAYPEV 156


>all1435 Non COG
          Length = 158

 Score =  128 bits (322), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 58/138 (42%), Positives = 96/138 (69%)

Query: 15  SPFVQELIKQWRAQDTHGAWDGKSNADLLAPYIITRELRREIPIIGDPDPETLWRLELFY 74
           SPF++ L+ Q R QD +G +   ++  LL  +++T++ +REI + G+ DP T+ R+  F+
Sbjct: 18  SPFLKALVLQIRGQDAYGVYRSWADDLLLKGFVVTKQKKREISVQGEVDPVTISRIMSFF 77

Query: 75  NAVGLAIERQTGSIATPMMKMSHEGFGRMVLMAGRLVVVNKHLRDVHRFGFESVDKLAEE 134
            A+   IE++TG I+  ++ +SHEGFG  ++ +GRL++  K LRD HRFGF+S++KLAEE
Sbjct: 78  KAIAARIEQETGLISQVVLDLSHEGFGWALVFSGRLILTVKTLRDAHRFGFDSLEKLAEE 137

Query: 135 GDKIVTAGVEMIRQFPEV 152
           GD+ V  GV++  ++ EV
Sbjct: 138 GDRYVERGVDLANRYKEV 155


>lin1685 [KL] COG0553 Superfamily II DNA/RNA helicases, SNF2 family Lin
           Listeria innocua
          Length = 1072

 Score = 30.8 bits (68), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 26/41 (63%)

Query: 104 VLMAGRLVVVNKHLRDVHRFGFESVDKLAEEGDKIVTAGVE 144
           V  +G  +VVNK  +D+++F + ++ KLAE  +  +  G+E
Sbjct: 436 VHFSGTKMVVNKQEKDLYQFYYRTIPKLAEYAEIYMEDGLE 476


>UU481 Non COG
          Length = 888

 Score = 30.0 bits (66), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/18 (66%), Positives = 14/18 (77%)

Query: 122 RFGFESVDKLAEEGDKIV 139
           R G ES+DK+ E GDKIV
Sbjct: 288 RLGLESLDKILENGDKIV 305


>PAE1576 [CP] COG0651 Formate hydrogenlyase subunit 3/Multisubunit Na+/H+
           antiporter, MnhD subunit Pya Pyrobaculum aerophilum
          Length = 481

 Score = 29.3 bits (64), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 71  ELFYNAVGLAIERQTGSIATPMMKMSHEGFGRMVL-MAGRLVVVNKHLRDVHRFG 124
           ++ Y  +G+A+    G  A  ++ +SH G G+ VL M     +++ H RD+ + G
Sbjct: 301 QMGYLLLGVALLNPYGYTAAALLYLSH-GLGKAVLFMTAGYFIMHLHTRDIEKMG 354