BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2306.p         (105 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1159 [K] COG1396 Predicted transcriptional regulators Rso Ral...    54   1e-07
SMc02184 [K] COG1396 Predicted transcriptional regulators Sme Si...    53   1e-07
XF1720 [K] COG1396 Predicted transcriptional regulators Xfa Xyle...    52   4e-07
Z5888 [K] COG1396 Predicted transcriptional regulators EcZ Esche...    50   9e-07
ECs5252 [K] COG1396 Predicted transcriptional regulators Ecs Esc...    50   9e-07

>RSc1159 [K] COG1396 Predicted transcriptional regulators Rso Ralstonia
          solanacearum
          Length = 182

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 35/48 (72%)

Query: 28 VRQLRRERGWSQEMLAENSNLNRSYIGEIERGTAIASLVTVEKLANAL 75
          ++ LR++RGW+ E+LAE + L +SY+ ++ERG ++ S+    KLA AL
Sbjct: 5  LKPLRKDRGWTLEVLAERTGLTKSYLSKVERGLSVPSIAVAMKLAGAL 52


>SMc02184 [K] COG1396 Predicted transcriptional regulators Sme
          Sinorhizobium meliloti
          Length = 89

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 42/67 (62%)

Query: 22 QSFGIGVRQLRRERGWSQEMLAENSNLNRSYIGEIERGTAIASLVTVEKLANALTLAPSA 81
          Q  G  +R LR ERG SQE LA  + ++R+Y+G +ERG    ++ T+E LA AL +  +A
Sbjct: 5  QIMGWNLRLLRVERGLSQERLAFEARIDRAYVGRVERGMENVTISTIEALARALEVPVAA 64

Query: 82 LVTHGER 88
          L +  +R
Sbjct: 65 LFSQPDR 71


>XF1720 [K] COG1396 Predicted transcriptional regulators Xfa Xylella
           fastidiosa 9a5c
          Length = 124

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 6/85 (7%)

Query: 4   PVIASRHADEEALTSALVQSFGIGVRQLRRERGWSQEMLAENSNLNRSYIGEIERGTAIA 63
           P   +R+  E AL      +FG  VR  R ++G +QE LA  + + RS++G+IERG  + 
Sbjct: 39  PPGTTRYEAEPAL------AFGKAVRAFRMDQGVAQEELASMAGIERSHMGKIERGEHLP 92

Query: 64  SLVTVEKLANALTLAPSALVTHGER 88
           SL  + K+A AL ++ + L+   ER
Sbjct: 93  SLAVILKVAAALKMSGTELMAATER 117


>Z5888 [K] COG1396 Predicted transcriptional regulators EcZ Escherichia
          coli O157:H7 EDL933
          Length = 154

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query: 24 FGIGVRQLRRERGWSQEMLAENSNLNRSYIGEIERGTAIASLVTVEKLANALTLAPSALV 83
          FG  V++LR   G SQE  A+     RSY+  IERG + ASL  +E LANAL++ P  L+
Sbjct: 9  FGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPWRLL 68


>ECs5252 [K] COG1396 Predicted transcriptional regulators Ecs Escherichia
          coli O157:H7
          Length = 154

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query: 24 FGIGVRQLRRERGWSQEMLAENSNLNRSYIGEIERGTAIASLVTVEKLANALTLAPSALV 83
          FG  V++LR   G SQE  A+     RSY+  IERG + ASL  +E LANAL++ P  L+
Sbjct: 9  FGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPWRLL 68