BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2303.p         (99 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMB1344_2 [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase comp...    28   4.5  
PH0606_5 [L] COG1241 Predicted ATPase involved in replication co...    28   4.6  
XF2340 [O] COG0443 Molecular chaperone Xfa Xylella fastidiosa 9a5c     28   6.0  
RC0233 [O] COG0443 Molecular chaperone Rco Rickettsia conorii          28   7.2  
CPn0887 Non COG                                                        27   9.1  

>NMB1344_2 [C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide dehydrogenase (E3) component, and
           related enzymes Nme Neisseria meningitidis MC58
          Length = 483

 Score = 28.5 bits (62), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 12  HLSIIVRLCDMSEQEAPVGELVRATVKNCLLA 43
           HL + +   D  EQ AP GE      KNC++A
Sbjct: 124 HLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIA 155


>PH0606_5 [L] COG1241 Predicted ATPase involved in replication control,
           Cdc46/Mcm family Pho Pyrococcus horikoshii
          Length = 319

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 11  RHLSIIVRLCDMSEQEAPVGELVRATVKNCLLAMQTTGTEASEAAEIIEQLLQHELATLP 70
           R LS + R+ D+ E+     E   A + + L      G E SEA EI+E+LL+     +P
Sbjct: 253 RKLSKVERILDIVEKLERTSE-KGAKIDDILEEAAKFGIEKSEAREILEKLLEKGQIYMP 311


>XF2340 [O] COG0443 Molecular chaperone Xfa Xylella fastidiosa 9a5c
          Length = 638

 Score = 27.7 bits (60), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 11  RHLSIIVRLCDMSEQEAPVGELVRATVKNCLLAMQTTGTEASEAAEII 58
           +HL+I +    +   EA V +LVR +++ C +A+   G   S+  E+I
Sbjct: 295 KHLNIKLTRAKL---EALVDDLVRKSIEPCRIALNDAGLRTSDVQEVI 339


>RC0233 [O] COG0443 Molecular chaperone Rco Rickettsia conorii
          Length = 627

 Score = 27.7 bits (60), Expect = 7.2,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 23  SEQEAPVGELVRATVKNCLLAMQTTGTEASEAAEII 58
           +E E  V +L+  T++ C  A+Q  G +AS+  E++
Sbjct: 297 AELEKLVDDLIEKTIEPCRKALQDAGFKASDIQEVV 332


>CPn0887 Non COG
          Length = 822

 Score = 27.3 bits (59), Expect = 9.1,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%)

Query: 42  LAMQTTGTEASEAAEIIEQLLQHELATLPAERDKCRKVLEAAHLHAEYL 90
           L ++    E S   E+   LL H L  LP  R+K    LE    H  YL
Sbjct: 257 LVLRIARGEVSRTNEVDSVLLSHALQHLPFAREKAIPELEVLIDHGAYL 305