BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2302.p (880 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1545 [T] COG5001 Predicted signal transduction protein contai... 284 8e-76 CC0896 Non COG 261 5e-69 sll0267_6 [T] COG2200 FOG Syn Synechocystis 236 2e-61 VC0658_3 [T] COG2200 FOG Vch Vibrio cholerae 234 7e-61 RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum 232 2e-60 >RSc1545 [T] COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain Rso Ralstonia solanacearum Length = 776 Score = 284 bits (726), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 173/454 (38%), Positives = 259/454 (57%), Gaps = 24/454 (5%) Query: 429 YVGTQVD---ISSQKRLQEETRQLAFYDPLTGLPNRRLLLEKIEAAGASESTRNEVAGAL 485 Y+G + ++ + + RQLA YD LTGL NR E+++A A+ R L Sbjct: 318 YIGPMLTWALVTKEVEAENRIRQLAHYDTLTGLANRTNFREQLDARLAAPEARL----GL 373 Query: 486 FFVDIDNFKDLNDALGHSLGDQLLSQIAARLLKLTGSSGL-VARLGGDEFVVLLPSALAV 544 ++D+D FK +ND GH GD LL ++A RL + G+ +ARLGGDEF VL+P Sbjct: 374 LYIDLDGFKLVNDTKGHRAGDALLERVAQRLRAVCDRPGMAIARLGGDEFAVLVP----- 428 Query: 545 QDQKQEQDVASQFAQRIIDVMQERFDLSGVSHFAT-CSVGVALMRAHGANVEDLLRQGDL 603 + D A+ A +I+ + + L + S+G+AL AHG + E+LL + D+ Sbjct: 429 ---HDDADRAATLATALIEALGAPYALGADQNVRIGASIGIALAPAHGRDTENLLARADI 485 Query: 604 AMYAAKQKGRNTFCLFDQEMEYALHFRTGLESDLRRAIDSGE-FELHYQPQRD-QEGTLI 661 A+YAAK G+ LF +ME + R LE+ LR A++ + + YQP D G + Sbjct: 486 ALYAAKAAGKGLARLFCADMETRIQARALLEAQLRAALEHQDRLFVFYQPIVDVATGKVT 545 Query: 662 GVEALARWNSPFRGSVSPAIFIPVAEASGLILPLGQWVFQQACRQSVRWNRQGHKTPVVI 721 EAL RW+ RG V P F+P+AE SGLI LG++V +ACR++ RW + Sbjct: 546 AREALVRWHHAERGWVPPDEFVPIAEQSGLIDQLGRFVLHRACREATRWEDGAR-----V 600 Query: 722 AVNVSAVQLHQPDFVQHILATLQATGADPSHLKLELTESAMVEDVQATIEKMLELKRHGL 781 AVNVS +QL + Q + A L +G P L++E+TE+A++++ + E + +L G+ Sbjct: 601 AVNVSPMQLGKATLAQTVHAALIDSGLAPDRLEIEVTETALIQNEAESFEDLRQLYDMGV 660 Query: 782 ALSLDDFGTGYSSLSLLKRLPIDQIKIDQSFVRELLVAPSDVAIAKTIIALANALGLEVL 841 ++LDDFGTGYSSL+ L+ P D+IKID+SFVR+LL P + + I L LG+ + Sbjct: 661 RVALDDFGTGYSSLAHLRAFPFDKIKIDRSFVRDLLERPDSAVLVRAIADLGRQLGVTTV 720 Query: 842 AEGVETREQQQFLALLGCTRYQGYLFGRPLPAEQ 875 AEGVET+ + + GCT QGY +GRP P+++ Sbjct: 721 AEGVETQAHVRGIREAGCTEAQGYYYGRPAPSDE 754 >CC0896 Non COG Length = 677 Score = 261 bits (667), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 160/438 (36%), Positives = 238/438 (54%), Gaps = 18/438 (4%) Query: 440 KRLQEETRQLAFYDPLTGLPNRRLLLEKIEA--AGASESTRNEVAGALFFVDIDNFKDLN 497 +RL +E +LA D LT LPNRR +++A A +S R VAG +D+D+FK +N Sbjct: 219 RRLSDENDRLANLDSLTDLPNRRRYFAELDARVEAARQSGRGFVAGV---IDLDDFKPIN 275 Query: 498 DALGHSLGDQLLSQIAARLLKLTGSSGLVARLGGDEFVVLLPSALAVQDQKQEQDVASQF 557 DA GH+ GD+LL ++ RL G+ L ARLGGDEF +++ +AL E D Sbjct: 276 DAFGHATGDRLLIEVGRRLKAFDGAPILAARLGGDEFGLIIDAAL-------EPDALRVL 328 Query: 558 AQRIIDVMQERFDLSGVSHFATCSVGVALMRAHGANVEDLLRQGDLAMYAAKQKGRNTFC 617 + + +Q +DL GV S+G + E L + D A+Y AKQ G+ Sbjct: 329 GRELCASLQATYDLRGVRAQVGASIGFCPFPSGADTSEQLFERADYALYHAKQNGKGAAV 388 Query: 618 LFDQEMEYALHFRTGLESDLRRAIDSGEFELHYQPQRD-QEGTLIGVEALARWNSPFRGS 676 +FD+ E A+ +E LR A E +H+QP D I +EALARW SP G Sbjct: 389 VFDERHEAAIRDMAVVEQALRSADLEQEMSVHFQPLVDIVSQRTIALEALARWTSPEIGP 448 Query: 677 VSPAIFIPVAEASGLILPLGQWVFQQACRQSVRWNRQGHKTPVVIAVNVSAVQLHQPDFV 736 + P +FI AE SG I+ + + + +A R+ W V +++N+SA + + V Sbjct: 449 IRPDVFIGAAERSGQIVEITRLLVAKALREMRAW-----PMDVRVSINLSARDIASMENV 503 Query: 737 QHILATLQATGADPSHLKLELTESAMVEDVQATIEKMLELKRHGLALSLDDFGTGYSSLS 796 + +LA + + P + E+TE+A+V D + + G+ +LDDFGTG+SSLS Sbjct: 504 RRLLAIVSESCIAPHRIDFEITETAIVCDFDQARDALAAFHELGVRTALDDFGTGHSSLS 563 Query: 797 LLKRLPIDQIKIDQSFVRELLVAPSDVAIAKTIIALANALGLEVLAEGVETREQQQFLAL 856 L+ LP+D++KID SFV ++ P+ I +T++ L L +E + EGVET Q+ +A Sbjct: 564 HLRLLPLDKLKIDASFVSDIEHNPTSEDIVRTVLQLGRNLRMECVVEGVETEAQRDRVAA 623 Query: 857 LGCTRYQGYLFGRPLPAE 874 LG T QGY F RP+PAE Sbjct: 624 LGATVMQGYHFARPMPAE 641 >sll0267_6 [T] COG2200 FOG Syn Synechocystis Length = 253 Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 121/250 (48%), Positives = 163/250 (65%), Gaps = 8/250 (3%) Query: 630 RTGLESDLRRAIDSGEFELHYQPQRDQEGTLIGVEALARWNSPFRGSVSPAIFIPVAEAS 689 R LE+DLR A++ +F+++ QPQ D G IG EAL RWN P RG + P IFIP+AE Sbjct: 2 RFALEADLRSALEQKQFQVYLQPQVDSHGVWIGAEALLRWNHPGRGFIPPNIFIPIAEEI 61 Query: 690 GLILPLGQWVFQQACRQSVRWNRQGHKTPVVIAVNVSAVQLHQPDFVQHILATLQATGAD 749 GLI +G +V +Q C+ R + G + IA+NVS Q Q +F + I L TG D Sbjct: 62 GLIGGIGDFVLEQVCQYLARLQQLG--LTLRIAINVSPRQFRQANFAKEIKNLLACTGVD 119 Query: 750 PSHLKLELTESAMVEDVQATIEKMLELKRHGLALSLDDFGTGYSSLSLLKRLPIDQIKID 809 P L LE+TE +VED I M EL+ G+ S+DDFGTGYSSLS LKRLP++++KID Sbjct: 120 PYRLTLEVTEGLIVEDTHQAIATMFELQTLGIHFSVDDFGTGYSSLSYLKRLPLNELKID 179 Query: 810 QSFVRELLVAPSDV---AIAKTIIALANALGLEVLAEGVETREQQQFLALLGCTRYQGYL 866 ++FV++ AP D+ A+ + II++A L ++AEGVET EQ QFLA LGC YQGY Sbjct: 180 RAFVQD---APQDLNNAALVEAIISVARTFNLAIVAEGVETEEQVQFLAQLGCNFYQGYF 236 Query: 867 FGRPLPAEQF 876 +GRP+P ++F Sbjct: 237 YGRPMPIDEF 246 >VC0658_3 [T] COG2200 FOG Vch Vibrio cholerae Length = 283 Score = 234 bits (597), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 115/257 (44%), Positives = 169/257 (65%), Gaps = 2/257 (0%) Query: 622 EMEYALHFRTGLESDLRRAIDSGEFELHYQPQRDQEGTLIGVEALARWNSPFRGSVSPAI 681 EM+ + +E L A++ + EL YQPQ D++ +IGVEAL RWN P RG + P + Sbjct: 3 EMQAQVESFLEIEKGLHEALNQRQLELFYQPQVDEQHNIIGVEALIRWNHPKRGLLPPGV 62 Query: 682 FIPVAEASGLILPLGQWVFQQACRQSVRWNRQGHKTPVV--IAVNVSAVQLHQPDFVQHI 739 F+P+AE +G ILP+G W+ +QAC Q +W +QG P +A+N+S +Q Q F++ + Sbjct: 63 FMPIAEETGQILPIGNWIIEQACYQYAQWKKQGILPPHFRRLAINISPLQFAQESFIEQV 122 Query: 740 LATLQATGADPSHLKLELTESAMVEDVQATIEKMLELKRHGLALSLDDFGTGYSSLSLLK 799 L+ G ++LE+TES ++E+V++ IEKM +LK +++S+DDFGTGYSSL LK Sbjct: 123 NHALRQAGITGEPIELEITESLLLENVESAIEKMAKLKESQISISIDDFGTGYSSLRYLK 182 Query: 800 RLPIDQIKIDQSFVRELLVAPSDVAIAKTIIALANALGLEVLAEGVETREQQQFLALLGC 859 L +D +KID+SFV +L + +D AI TI+A+A L LEV+AEGVE + L LGC Sbjct: 183 HLAVDVLKIDRSFVNQLHLDDNDQAIVDTILAIARKLNLEVIAEGVEDTSELAALKKLGC 242 Query: 860 TRYQGYLFGRPLPAEQF 876 ++QGYLF +PL AE+ Sbjct: 243 NQFQGYLFDKPLRAEEI 259 >RSc0510_3 [T] COG2200 FOG Rso Ralstonia solanacearum Length = 282 Score = 232 bits (592), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 121/260 (46%), Positives = 158/260 (60%), Gaps = 2/260 (0%) Query: 616 FCLFDQEMEYALHFRTGLESDLRRAIDSGEFELHYQPQ-RDQEGTLIGVEALARWNSPFR 674 +C F+ M +H + L DLR A++ E LHYQP+ G ++GVEAL RW P R Sbjct: 1 YCFFEASMNTNVHQQLQLVQDLRLALERHELVLHYQPKFSAPHGPVVGVEALVRWQHPER 60 Query: 675 GSVSPAIFIPVAEASGLILPLGQWVFQQACRQSVRWNRQGHKTPVVIAVNVSAVQLHQPD 734 G V P FIP+AE +GLI+PLG WV +ACRQ +W R+GH IAVN+SAVQ Sbjct: 61 GLVQPDAFIPLAEKTGLIVPLGAWVLDEACRQMAQWRREGHAQ-WSIAVNLSAVQFAHAA 119 Query: 735 FVQHILATLQATGADPSHLKLELTESAMVEDVQATIEKMLELKRHGLALSLDDFGTGYSS 794 V + TL +P L LE+TES + D A++ + +L G+ +S+DDFGTGYSS Sbjct: 120 LVDTVRDTLARHALEPQGLTLEITESTAMRDADASLHILQQLHAMGVRISIDDFGTGYSS 179 Query: 795 LSLLKRLPIDQIKIDQSFVRELLVAPSDVAIAKTIIALANALGLEVLAEGVETREQQQFL 854 L LKRLP ++KID+ FVR+L D AI ++AL L L ++AEGVET QQ FL Sbjct: 180 LLYLKRLPASELKIDRGFVRDLAHDSEDAAIVSAVVALGQTLNLRIVAEGVETEAQQAFL 239 Query: 855 ALLGCTRYQGYLFGRPLPAE 874 LGC QG L GRP+ A+ Sbjct: 240 TRLGCHALQGNLLGRPMTAQ 259