BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2296.p         (363 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI1702 [L] COG0582 Integrase Bme Brucella melitensis                 47   1e-04
SMc02187 [L] COG0582 Integrase Sme Sinorhizobium meliloti              39   0.027
mll4043 [L] COG0582 Integrase Mlo Mesorhizobium loti                   37   0.067
AGl2007 [L] COG0582 Integrase Atu Agrobacterium tumefaciens stra...    35   0.33 
mlr5460 [L] COG0582 Integrase Mlo Mesorhizobium loti                   34   0.65 

>BMEI1702 [L] COG0582 Integrase Bme Brucella melitensis
          Length = 398

 Score = 46.6 bits (109), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 15/110 (13%)

Query: 188 AMHASQISQEPDGWWWTIPQDKLRARRRDAAMDHRVPLVGRALEIVRRRVQASSTGYLFE 247
           ++H SQI    DG  WTIP + ++ R+ DA  D RVPL   A++++    + +  G+LF 
Sbjct: 246 SIHESQI----DGNVWTIPGEAMKGRK-DATNDFRVPLTVEAMKVIDIARRHARDGFLFP 300

Query: 248 GRKGGGFDPKNVGVAVWNAREDCESRPDYQRPRLPISDW------TPNDL 291
             + G      +G+ +  A+   E+RP   R  L   DW      TP+D+
Sbjct: 301 NVRSGVISDMTLGMFMRRAK--LEARPHGFRSSL--RDWIAETTDTPHDI 346


>SMc02187 [L] COG0582 Integrase Sme Sinorhizobium meliloti
          Length = 402

 Score = 38.5 bits (88), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 196 QEPDGWWWTIPQDKLRARRRDAAMDHRVPLVGRALEIVRRRVQASSTGYLFEGRKGG 252
           ++ +G  WTIP + ++ RR  A  D RVPL   ALE++ +  + +  G+LF   K G
Sbjct: 251 EQINGDVWTIPGEAMKGRR-GATADFRVPLSDAALEVIEQARRHAREGFLFPSVKKG 306


>mll4043 [L] COG0582 Integrase Mlo Mesorhizobium loti
          Length = 398

 Score = 37.0 bits (84), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 7/52 (13%)

Query: 203 WTIPQDKLRARRRDAAMDHRVPLVGRALEIVRRR--VQASSTGYLFEGRKGG 252
           WT+P  +++A R     +HRVPL  RALEI+     V+ +  G++F G K G
Sbjct: 271 WTVPAARMKAGR-----EHRVPLSARALEILNAVVPVRTAPDGFIFPGAKEG 317


>AGl2007 [L] COG0582 Integrase Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 396

 Score = 34.7 bits (78), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 7/52 (13%)

Query: 203 WTIPQDKLRARRRDAAMDHRVPLVGRALEIVRRRVQASS--TGYLFEGRKGG 252
           WT+P ++++A R     +HRVPL  R + I+++  +  S    ++F G+K G
Sbjct: 261 WTVPAERMKAAR-----EHRVPLSSRTITILKKLAEFGSDENSFVFPGQKPG 307


>mlr5460 [L] COG0582 Integrase Mlo Mesorhizobium loti
          Length = 393

 Score = 33.9 bits (76), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 200 GWWWTIPQDKLRARRRDAAMDHRVPLVGRALEIVRRRVQASSTGYLFEGRKGGGFDPKNV 259
           G  WTIP D ++ R   A  D RVPL   AL ++ +  + +  G+LF   + G     ++
Sbjct: 255 GDVWTIPADMMKGRE-GATGDFRVPLSKEALAVIEQAKRHARDGFLFPSLRRGVV--SDM 311

Query: 260 GVAVWNAREDCESRPDYQRPRLPISDW 286
            ++ +  R    +RP   R  L   DW
Sbjct: 312 TLSRYMERRKLTARPHGFRSSL--RDW 336