BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2292.p         (180 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA5052 [D] COG3087 Cell division protein Pae Pseudomonas aeruginosa    33   0.33 
ZfrdA [C] COG1053 Succinate dehydrogenase/fumarate reductase, fl...    32   0.71 
ECs5135 [C] COG1053 Succinate dehydrogenase/fumarate reductase, ...    32   0.71 
STM4343 [C] COG1053 Succinate dehydrogenase/fumarate reductase, ...    30   2.0  
frdA [C] COG1053 Succinate dehydrogenase/fumarate reductase, fla...    30   2.1  

>PA5052 [D] COG3087 Cell division protein Pae Pseudomonas aeruginosa
          Length = 231

 Score = 33.1 bits (74), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 10/73 (13%)

Query: 92  AGSTYGLQAGQFLVAGEADTLASSI----KAARLPAQQIANVQDQGGTLWTVVAVGPYGS 147
           A + + LQAG F    +AD + + I    ++  + A    NV+D+    W  V VGP+ S
Sbjct: 151 ASTQFFLQAGSFRKQSDADRVRAQIILLGQSVNVEA---GNVRDE---TWYRVMVGPFNS 204

Query: 148 LDDVNAANAAVAA 160
            D ++ A   +++
Sbjct: 205 RDQLSQAQKTLSS 217


>ZfrdA [C] COG1053 Succinate dehydrogenase/fumarate reductase,
           flavoprotein subunit EcZ Escherichia coli O157:H7 EDL933
          Length = 602

 Score = 32.0 bits (71), Expect = 0.71,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 28  IGQGLNQA---AEQVMAALPWRKAEQKLEAGVAKGAPAHLAPPAVAV-GASKATPLAASS 83
           +G GLN A   A   MA    R A Q+L+ G  K    +     +A   A   T L  S 
Sbjct: 509 LGHGLNVAECMAHSAMARKESRGAHQRLDEGCTKRDDVNFLKHTLAFRDADGTTRLEYSD 568

Query: 84  LLIPIVPPAGSTYG 97
           + I  +PPA   YG
Sbjct: 569 VKITTLPPAKRVYG 582


>ECs5135 [C] COG1053 Succinate dehydrogenase/fumarate reductase,
           flavoprotein subunit Ecs Escherichia coli O157:H7
          Length = 602

 Score = 32.0 bits (71), Expect = 0.71,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 28  IGQGLNQA---AEQVMAALPWRKAEQKLEAGVAKGAPAHLAPPAVAV-GASKATPLAASS 83
           +G GLN A   A   MA    R A Q+L+ G  K    +     +A   A   T L  S 
Sbjct: 509 LGHGLNVAECMAHSAMARKESRGAHQRLDEGCTKRDDVNFLKHTLAFRDADGTTRLEYSD 568

Query: 84  LLIPIVPPAGSTYG 97
           + I  +PPA   YG
Sbjct: 569 VKITTLPPAKRVYG 582


>STM4343 [C] COG1053 Succinate dehydrogenase/fumarate reductase,
           flavoprotein subunit Sty Salmonella typhimurium LT2
          Length = 596

 Score = 30.4 bits (67), Expect = 2.0,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 28  IGQGLNQA---AEQVMAALPWRKAEQKLEAGVAKGAPAHLAPPAVAV-GASKATPLAASS 83
           +G GLN A   A   +A    R A Q+L+ G  +    +     +A   A   T L  S 
Sbjct: 509 LGHGLNVAECMAHSALARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSD 568

Query: 84  LLIPIVPPAGSTYGLQA 100
           + I  +PPA   YG +A
Sbjct: 569 VKITTLPPAKRVYGGEA 585


>frdA [C] COG1053 Succinate dehydrogenase/fumarate reductase,
           flavoprotein subunit Eco Escherichia coli K12
          Length = 602

 Score = 30.4 bits (67), Expect = 2.1,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 28  IGQGLNQA---AEQVMAALPWRKAEQKLEAGVAKGAPAHLAPPAVAV-GASKATPLAASS 83
           +G GLN A   A   MA    R A Q+L+ G  +    +     +A   A   T L  S 
Sbjct: 509 LGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEYSD 568

Query: 84  LLIPIVPPAGSTYG 97
           + I  +PPA   YG
Sbjct: 569 VKITTLPPAKRVYG 582