BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2287.p (1324 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0763 [S] COG3523 Uncharacterized protein conserved in bacteri... 116 4e-25 PA0077 [S] COG3523 Uncharacterized protein conserved in bacteria... 107 2e-22 PA2361 [S] COG3523 Uncharacterized protein conserved in bacteria... 97 2e-19 mlr2360 Non COG 97 2e-19 YPO3603 [S] COG3523 Uncharacterized protein conserved in bacteri... 90 4e-17 >RSp0763 [S] COG3523 Uncharacterized protein conserved in bacteria Rso Ralstonia solanacearum Length = 1313 Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 81/277 (29%), Positives = 130/277 (46%), Gaps = 16/277 (5%) Query: 62 YRSTWILVIGQQGAGKSSLLASLDPTQWQTPSEQQQALIIDG------SDWLFLPRGVLI 115 Y W +VIG AGKS+ + + + Q P + +I G DW F G+L+ Sbjct: 118 YELPWYIVIGNPAAGKSTAVLN---SGLQFPFADKGGAVIQGIGGTRNCDWFFTTEGILL 174 Query: 116 DPPGRWSAAEANSQPGRVWKGFLGKLDLLRPERPIDAVLLVVSARSLQADSGAQRLTLAE 175 D GR+S E + R W GFL L RP+ PI+ +++ VS L + + LA+ Sbjct: 175 DTAGRYSVHEEDR---REWLGFLDLLKRYRPKAPINGIVVTVSVSELTQNRPEFAINLAK 231 Query: 176 SLRAQLALLERQVEFSLPVYVVISEMDTVSGFAAFWQTQCAVQRREMVGWSMPLTTGSEA 235 +LR ++ L ++E PVYV+ ++ D ++GF F+ +R + G S+P ++ Sbjct: 232 NLRQRVQELTERLEVFAPVYVMFTKADLITGFTEFFGDSEKQERDRVWGASLPFEPDAKP 291 Query: 236 -TEQWVDHAFDYLSGQLRDLQIQVAAKHHHADPAQIDQFMLFPRHLQQLREPVRACMAQV 294 D FD L L+ +I VA H + FP ++ +RA + + Sbjct: 292 DVAALFDQRFDELCDGLK--EISVAQISLHQKNKLSPGLLSFPLEFASIKPALRAFLVTL 349 Query: 295 FQASSWQTGCFCRGLYFTGALPAEDASAIAAGDDLAR 331 F + +Q RG YFT AL E A+ A+ + +AR Sbjct: 350 FDENPFQYKPVFRGFYFTSAL-QEGATNSASAERIAR 385 >PA0077 [S] COG3523 Uncharacterized protein conserved in bacteria Pae Pseudomonas aeruginosa Length = 1101 Score = 107 bits (267), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/267 (28%), Positives = 129/267 (48%), Gaps = 15/267 (5%) Query: 56 TPRESSYRSTWILVIGQQGAGKSSLLASLDPTQWQTP-SEQQQALIIDG------SDWLF 108 + R + Y W ++IG G+GK++ L + + P + Q A I G DW F Sbjct: 43 SERRNLYELPWYVIIGPPGSGKTTALMN---SGLDFPLAAQMGAGAIRGVGGTRNCDWWF 99 Query: 109 LPRGVLIDPPGRWSAAEANSQPGRV-WKGFLGKLDLLRPERPIDAVLLVVSARSLQADSG 167 VL+D GR++ ++++Q + W GFL L R RPID + +S L S Sbjct: 100 TDEAVLLDTAGRYTTQDSHAQVDKAAWLGFLDLLKTQRKRRPIDGAFIAISLSDLLLGSD 159 Query: 168 AQRLTLAESLRAQLALLERQVEFSLPVYVVISEMDTVSGFAAFWQTQCAVQRREMVGWSM 227 A+R A+++RA++ L +Q+ P+YV++++ D V GF F+ + +R ++ G + Sbjct: 160 AERAAHAQAIRARIQELYQQLGVRFPIYVMLTKFDLVPGFMEFFDSLNREERAQVWGMTF 219 Query: 228 PLTTG--SEATEQWVDHAFDYLSGQLRDLQIQVAAKHHHADPAQIDQFMLFPRHLQQLRE 285 L G +E D F L +L ++ + DPA+ D FP+ LRE Sbjct: 220 ALDDGKSAEGPLAVFDSEFALLEQRLTARLVERLQQER--DPARRDLVYGFPQQFAALRE 277 Query: 286 PVRACMAQVFQASSWQTGCFCRGLYFT 312 + + VF+ + ++ RGLYFT Sbjct: 278 CLGEFLNGVFKPNPYEERPLLRGLYFT 304 >PA2361 [S] COG3523 Uncharacterized protein conserved in bacteria Pae Pseudomonas aeruginosa Length = 1271 Score = 97.4 bits (241), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 98/351 (27%), Positives = 154/351 (43%), Gaps = 37/351 (10%) Query: 973 ELNRYVQFKEPAGQVAQLDQLFLKQMPDLDTGNCADILSTYKPADYGNDLFSAHRLKLES 1032 EL ++ + PA AQL +L +D G+CADIL+ +DL + + L Sbjct: 934 ELQKF-KADNPASTAAQLAKLVGNDFNQMDIGSCADILNGVLLPSSRSDL-ATRLVDLRQ 991 Query: 1033 LIQANCQSGRDADASQAYSRLATRFNRELAGRYPFG-PLGSADASLVTVRQFFADYMAQR 1091 CQS + A+QA+ LA FN+ LAGR+PF L +ADA VR + Sbjct: 992 GALGRCQSLQQQQAAQAWKDLADYFNQYLAGRFPFAYSLEAADAEPGRVRHLLQLMETRL 1051 Query: 1092 ASLRASLQGLSGPYWTSAQQFLNQLDATGKFFQGTLSLTPTPPAAAKTTSTAPADSDSNA 1151 +R L + P +A+ F+ +L+ ++ G L + D + Sbjct: 1052 PQVREGLAQVRSPDLPAAEDFVRRLEQAQRWL-GPL-----------------FERDKSG 1093 Query: 1152 ALASTPVKLAVQFHAQPGNSSGAEQLVNWALSSGSKQAAFPN-RGTTLDWAYGQALVLDL 1210 L V L + + + GA+Q++ W+L SG +++ FP + L W G L + L Sbjct: 1094 LLG---VALDIDWRSDRSLERGADQVIAWSLYSGDQESRFPGAQDKGLTWNVGDPLKIML 1150 Query: 1211 TWASGSQWQPAPDLQQTDLDTSGLGASFSASGDWALLRLIEKH----QPANGYVASSKEP 1266 WA +PA D +Q L + L A +S G WALLR++ H +P N V ++ P Sbjct: 1151 RWAKNGSQRPADDPRQASLAVADLEAGWSYQGSWALLRMMRAHFSRQRPPN--VDYTEFP 1208 Query: 1267 NKLMLEFLVPVTSNGNATGKLATSTAKLYVGLNLSGTDPKTHAAVSLKLPQ 1317 L L P + A L S ++L G P + + ++ PQ Sbjct: 1209 LVLQLPVYAPYSPENEARMFLRLSL------MSLGGKTPLSIQPLPVRAPQ 1253 Score = 68.9 bits (167), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 89/204 (43%), Gaps = 7/204 (3%) Query: 151 DAVLLVVSARSLQADSGAQRLTLAESLRAQLALLERQVEFSLPVYVVISEMDTVSGFAAF 210 D V+ + LQ G Q L + R + L +++ SLPVYVVI+ M+ + GF Sbjct: 136 DGVVWNIPLARLQ--DGEQAANLGLAARRRYVELTQRLGLSLPVYVVITGMEDLPGFQEL 193 Query: 211 WQTQCAVQRREMVGWSMPLTTGSEATEQWVDHAFDYLSGQLRDLQIQVAAKHHHADPAQI 270 R +GWS P + +W + A + ++ L + +++ D Sbjct: 194 LAALPEEARERALGWSSPFAAEAAWQSRWCEQALEEITATLTESIVELGTLRGQVD---- 249 Query: 271 DQFMLFPRHLQQLREPVRACMAQVFQASSWQTGCFCRGLYFTGA-LPAEDASAIAAGDDL 329 ++ P L+ LR ++A + VFQ ++ RGLY +G+ A + D Sbjct: 250 NELYCLPPRLESLRGSLQALLEPVFQGNARGEAPRFRGLYLSGSEAAGAAADEVLPAVDA 309 Query: 330 ARNDIAFVDDLVIRKILAEPRLAR 353 R +F L R+ILAE LA+ Sbjct: 310 PRRRSSFASQLWARRILAEEGLAQ 333 >mlr2360 Non COG Length = 1176 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 90/328 (27%), Positives = 143/328 (43%), Gaps = 26/328 (7%) Query: 3 LYIVIACAVLIALVLSILIWRARKPVRKPLGAFVARCR------RLLAMLLWHPLAYL-- 54 L I + AVL AL I W+ RK +K L A + R ++L + +A L Sbjct: 43 LIIGLTVAVL-ALFYGIGFWQRRK-AQKALEAAIVRSDERNDDAQVLEARMSEAIATLKR 100 Query: 55 -TTPRESSYRSTWILVIGQQGAGKSSLLASLDPTQWQTP----SEQQQALIIDGS---DW 106 + R Y W ++IG GAGK++ L + + + P Q + G+ DW Sbjct: 101 TSGKRNFLYDIPWYIIIGPPGAGKTTALVN---SGLKFPLAGSGNAQPVAGVGGTRSCDW 157 Query: 107 LFLPRGVLIDPPGRWSAAEANSQPGRV-WKGFLGKLDLLRPERPIDAVLLVVSARSLQAD 165 F VLID GR++ E++ + + W FLG L R +PI+ V+L +S L Sbjct: 158 WFTDEAVLIDTAGRYTTQESDRERDKASWLAFLGLLKKNRVRQPINGVILAISLADLIGL 217 Query: 166 SGAQRLTLAESLRAQLALLERQVEFSLPVYVVISEMDTVSGFAAFWQTQCAVQRREMVGW 225 +R++L L ++ PVY++ ++ D VSGF ++ +RR++ G Sbjct: 218 DDQHIEAHVTEIRSRLRELHETLKIQFPVYLLFTKADLVSGFMDYFGQFDEARRRKVWGA 277 Query: 226 SMPLTTGSEATEQWVDHAFDYLSGQLRDLQIQVAAK-HHHADPAQIDQFMLFPRHLQQLR 284 + + FD L+ +L D ++A + ADP FP LR Sbjct: 278 TFQTADRTRNMAGEAPAEFDGLAKRLAD---EIADRLQEEADPVARIAIFGFPAQFGALR 334 Query: 285 EPVRACMAQVFQASSWQTGCFCRGLYFT 312 + +A +F AS Q RGLYF+ Sbjct: 335 NRIAHFIASLFDASRSQVNVSLRGLYFS 362 >YPO3603 [S] COG3523 Uncharacterized protein conserved in bacteria Ype Yersinia pestis Length = 1177 Score = 89.7 bits (221), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 107/429 (24%), Positives = 173/429 (40%), Gaps = 74/429 (17%) Query: 4 YIVIACAVLIALV-LSILIWRARKPVRK-----------PLGAFVARCRRLLAMLLWHPL 51 ++V A VL+A+ LS+ + R + + K P+ A + + L Sbjct: 58 WLVTAVFVLVAVCWLSLKVMRRVQHLEKLQLQTKIQLDDPVSADIEQQNHYLNGWKHQLQ 117 Query: 52 AYLTTPRESSYRSTWILVIGQQGAGKSSLLASLDPTQWQTPSEQ---------------- 95 +L TP E YR W +VIG + +GKS+L+ + SE+ Sbjct: 118 RHLNTP-EYLYRLPWYMVIGARNSGKSTLIKEGYKLTEISASERLHAEDAADLRVRCWLG 176 Query: 96 QQALIIDGSDWLFLPRGVLIDPPGRWSAAEANSQPGRVWKGFLGKLDLLRPERPIDAVLL 155 +QA+IID P GVLI+ P A +A S R+W+ L L R +P++ ++L Sbjct: 177 EQAVIID-------PAGVLIEQPTTPIAGKA-SLNSRLWQSLLSWLIEQRQRQPLNGIIL 228 Query: 156 VVSARSLQADSGAQRLTLAESLRAQLALLERQVEFSLPVYVVISEMDTVSGFAAFWQTQC 215 V + + AQR T + +L + + +P+YVV ++MD + GF A +Q+ Sbjct: 229 TVDLHQMMTANKAQRETYVADIHQRLQEIRLSLHSQVPLYVVFTKMDLLYGFEAMYQSLD 288 Query: 216 AVQRREMVGWSMPL---------TTGSEATEQWVDHAFDYLSGQLRDLQIQVAAKHHHAD 266 +R ++G + L T + +QWV L+G + D+ + + D Sbjct: 289 KAEREAVLGVTFSLNAADPDVWRTELKQFWQQWVAQ----LNGAMPDMML------NSVD 338 Query: 267 PAQIDQFMLFPRHLQQLREPVRACMAQVFQASSWQTGCFCRGLYFTGALPAEDASAIAAG 326 Q Q F R +Q L + V + + RG+Y T A I Sbjct: 339 AGQRSQLFSFTRQMQGLHDYVVQLLEGILYRGE-HAQPLLRGVYLTSAQQRGQMDDIFTQ 397 Query: 327 DDLARNDIA---------------FVDDLVIRKILAEPRLARPTRHGIWSRSTLLRRLQL 371 + +A F L + +LAEP LA +GIW + T R Sbjct: 398 SAAVQYHLAPQAFPTWPVSDTTPYFTKALFNQVLLAEPNLA--GENGIWLQKTRKRMFIF 455 Query: 372 TGVTMLVVL 380 +GV L L Sbjct: 456 SGVGALAAL 464 Score = 39.7 bits (91), Expect = 0.056, Method: Compositional matrix adjust. Identities = 53/203 (26%), Positives = 74/203 (36%), Gaps = 32/203 (15%) Query: 1056 RFNRELAGRYPFGPLGSADASLVTVRQFFADYMAQRASLRASLQGLSGPYWTSAQQFLNQ 1115 ++ LAGRYPF P D L +FF GP T Sbjct: 961 QYQTYLAGRYPFDPHAKQDVPLSEFERFF------------------GPKGT-------- 994 Query: 1116 LDATGKFFQGTLSLTPTPPAAAKTTSTAPADSDSNAALASTPVKLAVQFHAQPGNSSGAE 1175 LDA F+Q L + D LA F AQ N G + Sbjct: 995 LDA---FYQQNLKPFVENNLTGGSDGELLIRPDVLQQLAQARKIRDTFFSAQ--NGLGTQ 1049 Query: 1176 QLVNWALSSGSKQAAFPN-RGTTLDWAYGQALVLDLTWASGSQWQPAPDLQQTDLDTSGL 1234 + L SG+K+ + N G LD+A+G++ V+ L W + + L ++ Sbjct: 1050 FAIEPVLLSGNKRRSVLNLDGQLLDYAHGRSGVVHLVWPNSMRAGVESKLTLVPDESGKS 1109 Query: 1235 GASFSASGDWALLRLIEKHQPAN 1257 + S SG WA LRLI + N Sbjct: 1110 PRTLSFSGPWAQLRLINAGELTN 1132