BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2281.p         (362 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

MA2354 [S] COG1357 Uncharacterized low-complexity proteins Mac M...   102   1e-21
MA1892 [S] COG1357 Uncharacterized low-complexity proteins Mac M...    98   3e-20
slr1819 [S] COG1357 Uncharacterized low-complexity proteins Syn ...    94   6e-19
all3114 [S] COG1357 Uncharacterized low-complexity proteins Nos ...    91   3e-18
MA3328 [S] COG1357 Uncharacterized low-complexity proteins Mac M...    88   4e-17

>MA2354 [S] COG1357 Uncharacterized low-complexity proteins Mac
           Methanosarcina acetivorans str.C2A
          Length = 337

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 128/300 (42%), Gaps = 23/300 (7%)

Query: 28  DFQGLRLSGRDLRGLTFNHVDLRGSRLVQCDLSETSFIDCDLSSIDLSGSTLCKTAFIRC 87
           + Q   L    L G      +L G+ L + DL   +    DL   +L G+ LC    I  
Sbjct: 38  NLQEANLEKATLMGAVLQMANLYGANLQEADLQGANLFGADLQEANLCGANLCGADLIGA 97

Query: 88  RMPQAVLPTAYLKWLTMIKCDLRGSRWQQSHWHLCTVSECDFSATDLRDARLERSSFHQC 147
            +  A L  A  K   +++ DL+ +  Q+       + E D    +L+ A LE +   + 
Sbjct: 98  NLQGANLMGANFKEAILLRADLQETNLQKVDLQGANLCEADLEKANLKGADLEGADLQE- 156

Query: 148 QTDGADLSRVVLERASLQGIDFQGVTMTGLRAQGSVLAKADLRGKA-----LSGIQLQRC 202
               A+L    LE+A+L+G +    T+   + +G+ L +A+L G       L    L++ 
Sbjct: 157 ----ANLCEADLEKANLKGANIIKATLKETKLEGANLCEANLYGAKFKEANLKATNLKKA 212

Query: 203 MFTDSLLDDTDLQGADLSQSSFMGARLVRTNLQGVLASHGMFAKATLQQANMAQGDFHSA 262
              ++ L   +L+GA+L ++ F+ A L   NLQGV        KA L +AN+ + D   A
Sbjct: 213 NLEEAKLKKANLEGANLEEAIFINANLKGANLQGV-----DLTKANLIKANLIKADLKEA 267

Query: 263 IFHQATLLDCRLNDACFSSAVFSKSRLSGLSFARSDLRYSQFDHARGRDLTFDHARLDHS 322
              +  L    L DA    A   +++L     A  +L   Q    +    T  +A+LD  
Sbjct: 268 NLKKTNLKKTNLKDANLKEANLEETKL----IAAHNLSIDQLSKTK----TLHNAKLDEE 319



 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 10/288 (3%)

Query: 52  SRLVQCDLSETSFIDCDLSSIDLSGSTLCKTAFIRCRMPQAVLPTAYLKWLTMIKCDLRG 111
            R+ + DL E +    +L  ++L G+ L         + +A L  A L+   +   +L+ 
Sbjct: 7   KRVQEADLFEANSQGANLQEVNLQGANLFGFNLQEANLEKATLMGAVLQMANLYGANLQE 66

Query: 112 SRWQQSHWHLCTVSECDFSATDLRDARLERSSFHQCQTDGADLSRVVLERASLQGIDFQG 171
           +  Q ++     + E +    +L  A L  ++       GA+    +L RA LQ  + Q 
Sbjct: 67  ADLQGANLFGADLQEANLCGANLCGADLIGANLQGANLMGANFKEAILLRADLQETNLQK 126

Query: 172 VTMTGLRAQGSVLAKADLRGKALSGIQLQRCMFTDSLLDDTDLQGAD-----LSQSSFMG 226
           V + G     + L KA+L+G  L G  LQ     ++ L+  +L+GA+     L ++   G
Sbjct: 127 VDLQGANLCEADLEKANLKGADLEGADLQEANLCEADLEKANLKGANIIKATLKETKLEG 186

Query: 227 ARLVRTNLQGVLASHGMFAKATLQQANMAQGDFHSAIFHQATLLDCRLNDACFSSAVFSK 286
           A L   NL G       F +A L+  N+ + +   A   +A L    L +A F +A    
Sbjct: 187 ANLCEANLYGA-----KFKEANLKATNLKKANLEEAKLKKANLEGANLEEAIFINANLKG 241

Query: 287 SRLSGLSFARSDLRYSQFDHARGRDLTFDHARLDHSNFHDAQLEQCTF 334
           + L G+   +++L  +    A  ++       L  +N  DA L++   
Sbjct: 242 ANLQGVDLTKANLIKANLIKADLKEANLKKTNLKKTNLKDANLKEANL 289



 Score = 90.5 bits (223), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/261 (22%), Positives = 116/261 (44%), Gaps = 20/261 (7%)

Query: 24  VHQSDFQGLRLSGRDLRGLTFNHVDLRGSRLVQCDLSETSFIDCDLSSIDLSGSTLCKTA 83
           + ++   G  L   +L G      DL+G+ L   DL E +    +L   DL G+ L    
Sbjct: 44  LEKATLMGAVLQMANLYGANLQEADLQGANLFGADLQEANLCGANLCGADLIGANLQGAN 103

Query: 84  FIRCRMPQAVLPTAYLKWLTMIKCDLRGSRWQQSHWHLCTVSECDFSATDLRDARLERSS 143
            +     +A+L  A L+   + K DL+G+   ++      +   D    DL++A L  + 
Sbjct: 104 LMGANFKEAILLRADLQETNLQKVDLQGANLCEADLEKANLKGADLEGADLQEANLCEAD 163

Query: 144 FHQCQTDGADLSRVVLERASLQGID----------FQGVTMTGLRAQGSVLAKADLRGKA 193
             +    GA++ +  L+   L+G +          F+   +     + + L +A L+   
Sbjct: 164 LEKANLKGANIIKATLKETKLEGANLCEANLYGAKFKEANLKATNLKKANLEEAKLKKAN 223

Query: 194 LSGIQLQRCMFTDSLLDDTDLQGADLSQSSFMGARLVRTNLQGVLASHGMFAKATLQQAN 253
           L G  L+  +F ++ L   +LQG DL++++ + A L++ +L+          +A L++ N
Sbjct: 224 LEGANLEEAIFINANLKGANLQGVDLTKANLIKANLIKADLK----------EANLKKTN 273

Query: 254 MAQGDFHSAIFHQATLLDCRL 274
           + + +   A   +A L + +L
Sbjct: 274 LKKTNLKDANLKEANLEETKL 294



 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 53/224 (23%), Positives = 99/224 (44%), Gaps = 25/224 (11%)

Query: 24  VHQSDFQGLRLSGRDLRGLTFNHVDLRGSRLVQCDLSETSFIDCDLSSIDLSGSTLCKTA 83
           + +++  G  L G DL G      +L G+   +  L      + +L  +DL G+ LC+  
Sbjct: 79  LQEANLCGANLCGADLIGANLQGANLMGANFKEAILLRADLQETNLQKVDLQGANLCEAD 138

Query: 84  FIRCRMP---------------QAVLPTAYLKWLTMIKCDLRGSRWQ-----QSHWHLCT 123
             +  +                +A L  A LK   +IK  L+ ++ +     +++ +   
Sbjct: 139 LEKANLKGADLEGADLQEANLCEADLEKANLKGANIIKATLKETKLEGANLCEANLYGAK 198

Query: 124 VSECDFSATDLRDARLERSSFHQCQTDGADLSRVVLERASLQGIDFQGVTMTGLRAQGSV 183
             E +  AT+L+ A LE +   +   +GA+L   +   A+L+G + QGV +T      + 
Sbjct: 199 FKEANLKATNLKKANLEEAKLKKANLEGANLEEAIFINANLKGANLQGVDLTKANLIKAN 258

Query: 184 LAKADLRGKALSGIQLQRCMFTDSLLDDTDLQGADLSQSSFMGA 227
           L KADL+   L    L++       L D +L+ A+L ++  + A
Sbjct: 259 LIKADLKEANLKKTNLKKTN-----LKDANLKEANLEETKLIAA 297



 Score = 79.7 bits (195), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 102/244 (41%), Gaps = 15/244 (6%)

Query: 106 KCDLRGSRWQQSHWHLCTVSECDFSATDLRDARLERSSFHQCQTDGADLSRVVLERASLQ 165
           + DL  +  Q ++     +   +    +L++A LE+++       GA L    L  A+LQ
Sbjct: 11  EADLFEANSQGANLQEVNLQGANLFGFNLQEANLEKATLM-----GAVLQMANLYGANLQ 65

Query: 166 GIDFQGVTMTGLRAQ-----GSVLAKADLRGKALSGIQLQRCMFTDSLLDDTDLQGADLS 220
             D QG  + G   Q     G+ L  ADL G  L G  L    F +++L   DLQ  +L 
Sbjct: 66  EADLQGANLFGADLQEANLCGANLCGADLIGANLQGANLMGANFKEAILLRADLQETNLQ 125

Query: 221 QSSFMGARLVRTNLQGVLASHGMFAKATLQQANMAQGDFHSAIFHQATLLDCRLNDACFS 280
           +    GA L   +L+           A LQ+AN+ + D   A    A ++   L +    
Sbjct: 126 KVDLQGANLCEADLEKANLKGADLEGADLQEANLCEADLEKANLKGANIIKATLKETKLE 185

Query: 281 SAVFSKSRLSGLSFARSDLRYSQFDHARGRDLTFDHARLDHSNFHDAQLEQCTFAGADRK 340
            A   ++ L G  F  ++L+ +    A       + A+L  +N   A LE+  F  A+ K
Sbjct: 186 GANLCEANLYGAKFKEANLKATNLKKA-----NLEEAKLKKANLEGANLEEAIFINANLK 240

Query: 341 TMRL 344
              L
Sbjct: 241 GANL 244


>MA1892 [S] COG1357 Uncharacterized low-complexity proteins Mac
           Methanosarcina acetivorans str.C2A
          Length = 560

 Score = 97.8 bits (242), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/271 (26%), Positives = 122/271 (45%), Gaps = 19/271 (7%)

Query: 24  VHQSDFQGLRLSGRDLRGLTFNHVDLRGSRLVQCDLSETSFIDCDLSSIDLSGSTLCKTA 83
           +H++      LS  +L     +  DL+G+ + + +LSE +     LS +DLSG+ L    
Sbjct: 295 LHEAHLNEADLSKANLSKANLSEADLKGAYMRRANLSEANLSKAKLSGVDLSGANLS--- 351

Query: 84  FIRCRMPQAVLPTAYLKWLTMIKCDLRGSRWQQSHWHLCTVSECDFSATDLRDARLERSS 143
                   A L   YL   T      RG+   ++      +SE +    +L  A L  ++
Sbjct: 352 -------GADLNEFYLNKATYT----RGANLSEADLSEADLSEANLKGANLSGANLRGTN 400

Query: 144 FHQCQTDGADLSRVVLERASLQGIDFQGVTMTGLRAQGSVLAKADLRGKALSGIQLQRCM 203
             +      DLS   L  A L G+D  G  ++G    G  L++A+L G  L+GI L+R  
Sbjct: 401 LSKANLREVDLSGADLREADLSGVDLSGANLSGADLSGVDLSRANLNGADLNGIDLRRAN 460

Query: 204 FTDSLLDDTDLQGADLSQSSFMGARLVRTNLQGVLASHGMFAKATLQQANMAQGDFHSAI 263
             ++ L  T+L  ADLS++   GA L    L+G          A +++AN+++ D + A 
Sbjct: 461 LNEANLSKTNLNEADLSKAKLSGAYLSEAKLKG-----AKLKGAYMRKANLSEADLNGAD 515

Query: 264 FHQATLLDCRLNDACFSSAVFSKSRLSGLSF 294
             +A L +  LN    S      + L+G++ 
Sbjct: 516 LREANLSEANLNGVDLSVIDLRGANLNGVNI 546



 Score = 85.9 bits (211), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/293 (25%), Positives = 129/293 (44%), Gaps = 34/293 (11%)

Query: 52  SRLVQCDLSETSFIDCDLSSIDLSGSTLCKTAFIRCRMPQAVLPTAYLKWLTMIKCDLRG 111
           + L+  DLSE+   D  L    L+ + L K    +  + +A L  AY++     + +L  
Sbjct: 278 NNLIGADLSESDLRDAFLHEAHLNEADLSKANLSKANLSEADLKGAYMR-----RANLSE 332

Query: 112 SRWQQSHWHLCTVSECDFSATDLRDARLERSSFHQCQTDGADLSRVVLERASLQGIDFQG 171
           +   ++      +S  + S  DL +  L ++++    T GA+LS   L  A L   + +G
Sbjct: 333 ANLSKAKLSGVDLSGANLSGADLNEFYLNKATY----TRGANLSEADLSEADLSEANLKG 388

Query: 172 VTMTGLRAQGSVLAKADLRGKALSGIQLQRCMFTDSLLDDTDLQGADLSQSSFMGARLVR 231
             ++G   +G+ L+KA+LR   LSG  L+          + DL G DLS     GA L  
Sbjct: 389 ANLSGANLRGTNLSKANLREVDLSGADLR----------EADLSGVDLS-----GANLSG 433

Query: 232 TNLQGVLASHGMFAKATLQQANMAQGDFHSAIFHQATLLDCRLNDACFSSAVFSKSRLSG 291
            +L GV           L +AN+   D +     +A L +  L+    + A  SK++LSG
Sbjct: 434 ADLSGV----------DLSRANLNGADLNGIDLRRANLNEANLSKTNLNEADLSKAKLSG 483

Query: 292 LSFARSDLRYSQFDHARGRDLTFDHARLDHSNFHDAQLEQCTFAGADRKTMRL 344
              + + L+ ++   A  R      A L+ ++  +A L +    G D   + L
Sbjct: 484 AYLSEAKLKGAKLKGAYMRKANLSEADLNGADLREANLSEANLNGVDLSVIDL 536



 Score = 76.3 bits (186), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 71/246 (28%), Positives = 107/246 (43%), Gaps = 31/246 (12%)

Query: 127 CDFSATDLRDARLERSSFHQCQTDGADLSRVVLERASLQGIDFQGVTMTGLRAQGSVLAK 186
            D S +DLRDA L     H+   + ADLS+  L +A+L   D +G  M       + L+K
Sbjct: 283 ADLSESDLRDAFL-----HEAHLNEADLSKANLSKANLSEADLKGAYMRRANLSEANLSK 337

Query: 187 ADLRGKALSGIQL----------QRCMFT-DSLLDDTDLQGADLSQSSFMGARLVRTNLQ 235
           A L G  LSG  L           +  +T  + L + DL  ADLS+++  GA L   NL+
Sbjct: 338 AKLSGVDLSGANLSGADLNEFYLNKATYTRGANLSEADLSEADLSEANLKGANLSGANLR 397

Query: 236 GVLASHGMFAKATLQQANMAQGDFHSAIFHQATLLDCRLNDACFSSAVFSKSRLSGLSFA 295
           G            L +AN+ + D   A   +A L    L+ A  S A      LSG+  +
Sbjct: 398 GT----------NLSKANLREVDLSGADLREADLSGVDLSGANLSGA-----DLSGVDLS 442

Query: 296 RSDLRYSQFDHARGRDLTFDHARLDHSNFHDAQLEQCTFAGADRKTMRLTDDALLAAQAR 355
           R++L  +  +    R    + A L  +N ++A L +   +GA     +L    L  A  R
Sbjct: 443 RANLNGADLNGIDLRRANLNEANLSKTNLNEADLSKAKLSGAYLSEAKLKGAKLKGAYMR 502

Query: 356 TLSTEE 361
             +  E
Sbjct: 503 KANLSE 508



 Score = 40.8 bits (94), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 12  NEID--KARRMARPVHQSDFQGLRLSGRDLRGLTFNHVDLRGSRLVQCDLSETSFIDCDL 69
           NE D  KA+     + ++  +G +L G  +R    +  DL G+ L + +LSE +    DL
Sbjct: 472 NEADLSKAKLSGAYLSEAKLKGAKLKGAYMRKANLSEADLNGADLREANLSEANLNGVDL 531

Query: 70  SSIDLSGSTLCKTAFIRCR 88
           S IDL G+ L     +  +
Sbjct: 532 SVIDLRGANLNGVNILMAK 550


>slr1819 [S] COG1357 Uncharacterized low-complexity proteins Syn
           Synechocystis
          Length = 331

 Score = 93.6 bits (231), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 139/321 (43%), Gaps = 36/321 (11%)

Query: 29  FQGLRLSG-----RDLRGLTFNHVDLRGSRLVQCDLSETSFIDCDLSSIDLSGSTLCKTA 83
           F GL+L G      DL G+  N  DLRG+ L+ C L+  +    +L + +LSG++L    
Sbjct: 17  FTGLKLPGINLEAADLIGIVLNEADLRGANLLFCYLNRANLGQANLVAANLSGASL---- 72

Query: 84  FIRCRMPQAVLPTAYLKWLTMIKCDLRGSRWQQSHWHLCTVSECDFSATDLRDARLERSS 143
                  QA L  A L+        L+G+  + S   L T+ + +    DLR        
Sbjct: 73  ------NQADLAGADLRSANFHGAMLQGAILRDSDMTLATLQDTNLIGADLR-------- 118

Query: 144 FHQCQTDGADLSRVVLERASLQGIDF-QGVTMTGLRAQGSVLAKADLRGKALSGIQLQR- 201
                  GADLS   L  A L+G +  Q         Q ++L +ADL+G  + G+ L R 
Sbjct: 119 -------GADLSGATLTGACLRGANMRQEKKGYYTNLQAAILGRADLQGANMKGVDLSRA 171

Query: 202 ----CMFTDSLLDDTDLQGADLSQSSFMGARLVRTNLQGVLASHGMFAKATLQQANMAQG 257
                   ++ L D DL+ ADLS ++  GA L   NL G   +      A L +A +++ 
Sbjct: 172 DLSYANLKEANLRDVDLRKADLSYANLKGALLTDANLSGAKLNGADLQNANLMRAKISEA 231

Query: 258 DFHSAIFHQATLLDCRLNDACFSSAVFSKSRLSGLSFARSDLRYSQFDHARGRDLTFDHA 317
           +  +     A +    LN    + +  S +R++    +R++L  +    A   +  F  A
Sbjct: 232 EMTAVNCQGAIMTHVNLNRTNLTGSNLSFTRMNSADLSRANLTKANLQEAELIEAFFARA 291

Query: 318 RLDHSNFHDAQLEQCTFAGAD 338
            L  +NF +A L +     A+
Sbjct: 292 NLTEANFINANLVRADLMSAN 312



 Score = 72.4 bits (176), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 112/271 (41%), Gaps = 16/271 (5%)

Query: 81  KTAFIRCRMPQAVLPTAYLKWLTMIKCDLRGSRWQQSHWHLCTVSECDFSATDLRDARLE 140
           +T F   ++P   L  A L  + + + DLRG+     +   C ++  +    +L  A L 
Sbjct: 14  ETLFTGLKLPGINLEAADLIGIVLNEADLRGA-----NLLFCYLNRANLGQANLVAANLS 68

Query: 141 RSSFHQCQTDGADLSRVVLERASLQGIDFQGVTMTGLRAQGSVLAKADLRGKALSGIQLQ 200
            +S +Q    GADL       A LQG   +   MT    Q + L  ADLRG  LSG  L 
Sbjct: 69  GASLNQADLAGADLRSANFHGAMLQGAILRDSDMTLATLQDTNLIGADLRGADLSGATLT 128

Query: 201 -RCMFTDSLLDD-----TDLQGADLSQSSFMGARLVRTNLQGVLASHGMFAKATLQQANM 254
             C+   ++  +     T+LQ A L ++   GA     N++GV  S    + A L++AN+
Sbjct: 129 GACLRGANMRQEKKGYYTNLQAAILGRADLQGA-----NMKGVDLSRADLSYANLKEANL 183

Query: 255 AQGDFHSAIFHQATLLDCRLNDACFSSAVFSKSRLSGLSFARSDLRYSQFDHARGRDLTF 314
              D   A    A L    L DA  S A  + + L   +  R+ +  ++      +    
Sbjct: 184 RDVDLRKADLSYANLKGALLTDANLSGAKLNGADLQNANLMRAKISEAEMTAVNCQGAIM 243

Query: 315 DHARLDHSNFHDAQLEQCTFAGADRKTMRLT 345
            H  L+ +N   + L       AD     LT
Sbjct: 244 THVNLNRTNLTGSNLSFTRMNSADLSRANLT 274



 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/174 (24%), Positives = 76/174 (43%), Gaps = 20/174 (11%)

Query: 21  ARPVHQSDFQGLRLSGRDL----------RGLTFNHVDLRGSRLVQCDLSETSFIDCDLS 70
           A  + ++D QG  + G DL          +      VDLR + L   +L      D +LS
Sbjct: 150 AAILGRADLQGANMKGVDLSRADLSYANLKEANLRDVDLRKADLSYANLKGALLTDANLS 209

Query: 71  SIDLSGSTLCKTAFIRCRMPQAVLPT-----AYLKWLTMIKCDLRGSRWQQSHWHLCTVS 125
              L+G+ L     +R ++ +A +       A +  + + + +L GS    +  +   +S
Sbjct: 210 GAKLNGADLQNANLMRAKISEAEMTAVNCQGAIMTHVNLNRTNLTGSNLSFTRMNSADLS 269

Query: 126 ECDFSATDLRDARL-----ERSSFHQCQTDGADLSRVVLERASLQGIDFQGVTM 174
             + +  +L++A L      R++  +     A+L R  L  A++ G DFQG TM
Sbjct: 270 RANLTKANLQEAELIEAFFARANLTEANFINANLVRADLMSANMVGADFQGATM 323



 Score = 30.8 bits (68), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 20/118 (16%)

Query: 243 MFAKATLQQANMAQGDFHSAIFHQA-----TLLDCRLNDACFSSAVFSKSRLSGLSFARS 297
           +F    L   N+   D    + ++A      LL C LN A    A    + LSG S  ++
Sbjct: 16  LFTGLKLPGINLEAADLIGIVLNEADLRGANLLFCYLNRANLGQANLVAANLSGASLNQA 75

Query: 298 DLRYSQFDHARGRDLTFDHARLDHSNFHDAQLEQCTFAGADRKTMRLTDDALLAAQAR 355
           DL                 A L  +NFH A L+      +D     L D  L+ A  R
Sbjct: 76  DLA---------------GADLRSANFHGAMLQGAILRDSDMTLATLQDTNLIGADLR 118



 Score = 30.8 bits (68), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 18/164 (10%)

Query: 199 LQRCMFTDSLLDDTDLQGADLSQSSFMGARLVRTNLQGVLASHGMFAKATLQQAN----- 253
           +QR    ++L     L G +L  +  +G  L   +L+G         +A L QAN     
Sbjct: 7   VQRYRNGETLFTGLKLPGINLEAADLIGIVLNEADLRGANLLFCYLNRANLGQANLVAAN 66

Query: 254 ----------MAQGDFHSAIFHQATLLDCRLNDACFSSAVFSKSRLSGLSFARSDLRYSQ 303
                     +A  D  SA FH A L    L D+  + A    + L G     +DL  + 
Sbjct: 67  LSGASLNQADLAGADLRSANFHGAMLQGAILRDSDMTLATLQDTNLIGADLRGADLSGAT 126

Query: 304 FDHA--RGRDLTFDHARLDHSNFHDAQLEQCTFAGADRKTMRLT 345
              A  RG ++  +  +  ++N   A L +    GA+ K + L+
Sbjct: 127 LTGACLRGANMRQEK-KGYYTNLQAAILGRADLQGANMKGVDLS 169


>all3114 [S] COG1357 Uncharacterized low-complexity proteins Nos Nostoc sp.
           PCC 7120
          Length = 576

 Score = 91.3 bits (225), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 128/310 (41%), Gaps = 15/310 (4%)

Query: 26  QSDFQGLRLSGRDLRGLTFNHVDLRGSRLVQCDLSETSFIDCDLSSIDLSGSTLCKTAFI 85
            ++  G+  SG +L G      +L G+     +L+   F D +LSS++LSG+ L      
Sbjct: 254 NANLTGVNFSGANLSGAYLGDANLTGANFQDANLTGADFGDANLSSVNLSGANLSSADLS 313

Query: 86  RCRMPQAVLPTAYLKWLTMIKCDLRGSRWQQSHWHLCTVSECDFSATDLRDARLERSSFH 145
              +  A L  A L+   + + DL  S      +     S  + S  +LRDA L R++  
Sbjct: 314 SANLTGANLSGANLQRADLSRADLSSSILNDGEF-----SHANLSGVNLRDAELRRANLS 368

Query: 146 QCQTDGADLSRVVLERASLQGIDFQGVTMTGLRAQGSVLAKADLRGKALSGIQLQRCMFT 205
                GA+LS   L  A L   D     ++G          ADL    L+G  L   +  
Sbjct: 369 NAILFGANLSDANLNHADLSRADLCRADLSG----------ADLTHATLNGTNLSDTILF 418

Query: 206 DSLLDDTDLQGADLSQSSFMGARLVRTNLQGVLASHGMFAKATLQQANMAQGDFHSAIFH 265
            + L D  L+ ADLS +   GA+L    L G +      +   L    +   D    I  
Sbjct: 419 STNLSDAILEAADLSYAKLNGAKLNYARLNGAMFLGADLSGVDLTGVVLNDADLSGGILS 478

Query: 266 QATLLDCRLNDACFSSAVFSKSRLSGLSFARSDLRYSQFDHARGRDLTFDHARLDHSNFH 325
           +A L    L+DA      FS + L+  + + S+L  +  + A        +A LD ++  
Sbjct: 479 EADLTGADLSDAILLGTDFSFANLNSANLSGSNLSGAILNGADLSSANLSYAILDDTDIS 538

Query: 326 DAQLEQCTFA 335
           +A LE+ T+ 
Sbjct: 539 EANLEEMTWG 548



 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 99/238 (41%), Gaps = 25/238 (10%)

Query: 109 LRGSRWQQSHWHLCTVSECDFSATDLR-----DARLERSSFHQCQTDGAD-----LSRVV 158
           LRG  +Q ++     ++  +FS  +L      DA L  ++F      GAD     LS V 
Sbjct: 242 LRGGNFQGAYLGNANLTGVNFSGANLSGAYLGDANLTGANFQDANLTGADFGDANLSSVN 301

Query: 159 LERASLQGIDFQGVTMTGLRAQGSVLAKADLRGKALSGIQLQRCMFTDSLLDDTDLQGAD 218
           L  A+L   D     +TG    G+ L +ADL           R   + S+L+D +   A+
Sbjct: 302 LSGANLSSADLSSANLTGANLSGANLQRADL----------SRADLSSSILNDGEFSHAN 351

Query: 219 LSQSSFMGARLVRTNLQGVLASHGMFAKATLQQANMAQGDFHSAIFHQATLLDCRLNDAC 278
           LS  +   A L R NL   +      + A L  A++++ D   A    A L    LN   
Sbjct: 352 LSGVNLRDAELRRANLSNAILFGANLSDANLNHADLSRADLCRADLSGADLTHATLNGTN 411

Query: 279 FSSAVFSKSRLSGLSFARSDLRYSQFDHARGRDLTFDHARLDHSNFHDAQLEQCTFAG 336
            S  +   + LS      +DL Y++ + A+      ++ARL+ + F  A L      G
Sbjct: 412 LSDTILFSTNLSDAILEAADLSYAKLNGAK-----LNYARLNGAMFLGADLSGVDLTG 464



 Score = 60.5 bits (145), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/188 (28%), Positives = 83/188 (44%), Gaps = 8/188 (4%)

Query: 154 LSRVVLERASLQGIDFQGVTMTGLRA---QGSVLAKADLRGKALSGIQLQRCMFTDSLLD 210
           L RV+    +++  +F  +    LR    QG+ L  A+L G   SG  L      D+ L 
Sbjct: 219 LLRVINYSDAIEIGNFSNIVGEFLRGGNFQGAYLGNANLTGVNFSGANLSGAYLGDANLT 278

Query: 211 DTDLQGADLSQSSFMGARLVRTNLQGVLASHGMFAKATLQQANMAQGDFHSAIFHQATLL 270
             + Q A+L+ + F  A L   NL G   S    + A L  AN++  +   A   +A L 
Sbjct: 279 GANFQDANLTGADFGDANLSSVNLSGANLSSADLSSANLTGANLSGANLQRADLSRADLS 338

Query: 271 DCRLNDACFSSAVFSKSRLSGLSFARSDLRYSQFDHARGRDLTFDHARLDHSNFHDAQLE 330
              LND  FS A      LSG++   ++LR +   +A         A L+H++   A L 
Sbjct: 339 SSILNDGEFSHA-----NLSGVNLRDAELRRANLSNAILFGANLSDANLNHADLSRADLC 393

Query: 331 QCTFAGAD 338
           +   +GAD
Sbjct: 394 RADLSGAD 401



 Score = 60.1 bits (144), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 96/233 (41%), Gaps = 35/233 (15%)

Query: 133 DLRDARLERSSFHQCQTDGADLSRVVLERASLQGIDFQGVTMTGLRAQGSVLAKADLRGK 192
           + + A L  ++       GA+LS   L  A+L G +FQ   +TG          AD    
Sbjct: 246 NFQGAYLGNANLTGVNFSGANLSGAYLGDANLTGANFQDANLTG----------ADFGDA 295

Query: 193 ALSGIQLQRCMFTDSLLDDTDLQGADLSQSSFMGARLVRTNLQGVLASHGMFAKATLQQA 252
            LS + L     + + L   +L GA+LS ++   A L R +L   + + G F+ A L   
Sbjct: 296 NLSSVNLSGANLSSADLSSANLTGANLSGANLQRADLSRADLSSSILNDGEFSHANLSGV 355

Query: 253 NMAQGDFHSAIFHQATLLDCRLNDACFSSAVFSKSRLSGLSFARSDLRYSQFDHA--RGR 310
           N+   +   A    A L    L+DA  + A  S++ L      R+DL  +   HA   G 
Sbjct: 356 NLRDAELRRANLSNAILFGANLSDANLNHADLSRADL-----CRADLSGADLTHATLNGT 410

Query: 311 DLT------------------FDHARLDHSNFHDAQLEQCTFAGADRKTMRLT 345
           +L+                    +A+L+ +  + A+L    F GAD   + LT
Sbjct: 411 NLSDTILFSTNLSDAILEAADLSYAKLNGAKLNYARLNGAMFLGADLSGVDLT 463


>MA3328 [S] COG1357 Uncharacterized low-complexity proteins Mac
           Methanosarcina acetivorans str.C2A
          Length = 299

 Score = 87.8 bits (216), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 118/273 (43%), Gaps = 17/273 (6%)

Query: 26  QSDFQGLRLSGR-----DLRGLTFNHVDLRGSRLVQCDLSETSFIDCDLSSIDLSGSTLC 80
           + DF+G  L G      DL+G  F   +LR + L   +L   +    +L   +L G+ L 
Sbjct: 6   KKDFRGANLQGTNFEKADLQGADFYEANLRLANLQGANLHSANLYGANLHLANLQGTKLG 65

Query: 81  KTAFIRCRMPQAVLPTAYLKWLTMIKCDLRGSRWQQSHWHLCTVSECDFSATDLRDARLE 140
            T      +  A L  A L    +   +L  +  Q +  +   +   D    +L++A L+
Sbjct: 66  GTNLQGVNLHLANLQGANLHLANLHLANLHLANLQGADLYGVNLQGADLQGANLQEANLQ 125

Query: 141 RSSFHQCQTDGADLSRVVLERASLQGIDFQGVTMTGLRAQGSVLAKADLRGKALSGIQLQ 200
            ++  +    GA L    LE A L GI FQG  + G+    + L +A+L+   L G +L+
Sbjct: 126 EANLEKTNFQGAKLGGAKLEGAYLIGIRFQGANLQGVDFHEANLQEANLQEANLQGAKLE 185

Query: 201 RCMFTDSLLDDTDLQGADLSQSSFMGARLVRTNLQGVLASHGMFAKATLQQANMAQGDFH 260
           R    ++ L++ +LQGA+L  +    A L   NLQG         KA L+  ++ + DF 
Sbjct: 186 RADLIEANLENANLQGANLQGADLQRADLYGANLQGANLRGVDLEKAHLKITDLGKVDFQ 245

Query: 261 SAIFHQA------------TLLDCRLNDACFSS 281
            A    A            TL D +L++    S
Sbjct: 246 GANLKGAHHLTIDQLSKVKTLYDAKLDEELLMS 278



 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/252 (28%), Positives = 104/252 (41%), Gaps = 24/252 (9%)

Query: 106 KCDLRGSRWQQSHWHLCTVSECDFSATDLRDARLERSSFHQCQTDGADLSRVVLERASLQ 165
           K D RG+  Q +++    +   DF   +LR A L+ ++ H     GA+L    L+   L 
Sbjct: 6   KKDFRGANLQGTNFEKADLQGADFYEANLRLANLQGANLHSANLYGANLHLANLQGTKLG 65

Query: 166 GIDFQGVTMTGLRAQGSVLAKADLRGKALSGIQLQRCMFTDSLLDDTDLQGADLSQSSFM 225
           G + QGV +     QG+ L  A+L    L    LQ        L   DLQGA+L +++  
Sbjct: 66  GTNLQGVNLHLANLQGANLHLANLHLANLHLANLQGADLYGVNLQGADLQGANLQEANLQ 125

Query: 226 GARLVRTNLQGVLASHGMFAKATL-----QQANMAQGDFHSAIFHQATLLDCRLN----- 275
            A L +TN QG          A L     Q AN+   DFH A   +A L +  L      
Sbjct: 126 EANLEKTNFQGAKLGGAKLEGAYLIGIRFQGANLQGVDFHEANLQEANLQEANLQGAKLE 185

Query: 276 -----DACFSSAVFSKSRLSGLSFARSDLRYSQFDHA--RGRDLTFDHARLDHSNFHDAQ 328
                +A   +A    + L G    R+DL  +    A  RG DL   H ++         
Sbjct: 186 RADLIEANLENANLQGANLQGADLQRADLYGANLQGANLRGVDLEKAHLKI-------TD 238

Query: 329 LEQCTFAGADRK 340
           L +  F GA+ K
Sbjct: 239 LGKVDFQGANLK 250



 Score = 78.2 bits (191), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/197 (24%), Positives = 89/197 (45%)

Query: 24  VHQSDFQGLRLSGRDLRGLTFNHVDLRGSRLVQCDLSETSFIDCDLSSIDLSGSTLCKTA 83
           +H ++ QG +L G +L+G+  +  +L+G+ L   +L   +    +L   DL G  L    
Sbjct: 54  LHLANLQGTKLGGTNLQGVNLHLANLQGANLHLANLHLANLHLANLQGADLYGVNLQGAD 113

Query: 84  FIRCRMPQAVLPTAYLKWLTMIKCDLRGSRWQQSHWHLCTVSECDFSATDLRDARLERSS 143
                + +A L  A L+        L G++ + ++         +    D  +A L+ ++
Sbjct: 114 LQGANLQEANLQEANLEKTNFQGAKLGGAKLEGAYLIGIRFQGANLQGVDFHEANLQEAN 173

Query: 144 FHQCQTDGADLSRVVLERASLQGIDFQGVTMTGLRAQGSVLAKADLRGKALSGIQLQRCM 203
             +    GA L R  L  A+L+  + QG  + G   Q + L  A+L+G  L G+ L++  
Sbjct: 174 LQEANLQGAKLERADLIEANLENANLQGANLQGADLQRADLYGANLQGANLRGVDLEKAH 233

Query: 204 FTDSLLDDTDLQGADLS 220
              + L   D QGA+L 
Sbjct: 234 LKITDLGKVDFQGANLK 250



 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 24  VHQSDFQGLRLSGRDLRGLTFNHVDLRGSRLVQCDLSETSFIDCDLSSIDLSGSTLCKTA 83
           +H ++ QG  L G +L+G      +L+ + L + +L +T+F    L    L G+ L    
Sbjct: 94  LHLANLQGADLYGVNLQGADLQGANLQEANLQEANLEKTNFQGAKLGGAKLEGAYLIGIR 153

Query: 84  FIRCRMPQAVLPTAYLKWLTMIKCDLRGSRWQQSHWHLCTVSECDFSATDLRDARLERSS 143
           F    +       A L+   + + +L+G++ +++      +   +    +L+ A L+R+ 
Sbjct: 154 FQGANLQGVDFHEANLQEANLQEANLQGAKLERADLIEANLENANLQGANLQGADLQRAD 213

Query: 144 FHQCQTDGADLSRVVLERASLQ-----GIDFQGVTMTG 176
            +     GA+L  V LE+A L+      +DFQG  + G
Sbjct: 214 LYGANLQGANLRGVDLEKAHLKITDLGKVDFQGANLKG 251



 Score = 57.0 bits (136), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 88/230 (38%), Gaps = 25/230 (10%)

Query: 158 VLERASLQGIDFQGVTMTGLRAQGSVLAKADLRGKALSGIQLQRCMFTDSLLDDTDLQGA 217
           + E+   +G + QG        QG+   +A+LR   L G  L       + L   +LQG 
Sbjct: 3   IPEKKDFRGANLQGTNFEKADLQGADFYEANLRLANLQGANLHSANLYGANLHLANLQGT 62

Query: 218 DLSQSSFMGARLVRTNLQGV---LAS----------------HGM------FAKATLQQA 252
            L  ++  G  L   NLQG    LA+                +G+         A LQ+A
Sbjct: 63  KLGGTNLQGVNLHLANLQGANLHLANLHLANLHLANLQGADLYGVNLQGADLQGANLQEA 122

Query: 253 NMAQGDFHSAIFHQATLLDCRLNDACFSSAVFSKSRLSGLSFARSDLRYSQFDHARGRDL 312
           N+ + +     F  A L   +L  A      F  + L G+ F  ++L+ +    A  +  
Sbjct: 123 NLQEANLEKTNFQGAKLGGAKLEGAYLIGIRFQGANLQGVDFHEANLQEANLQEANLQGA 182

Query: 313 TFDHARLDHSNFHDAQLEQCTFAGADRKTMRLTDDALLAAQARTLSTEET 362
             + A L  +N  +A L+     GAD +   L    L  A  R +  E+ 
Sbjct: 183 KLERADLIEANLENANLQGANLQGADLQRADLYGANLQGANLRGVDLEKA 232



 Score = 53.9 bits (128), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 55/124 (44%), Gaps = 10/124 (8%)

Query: 24  VHQSDFQGLRLSGRDLRGLTFNHVDLRGSRLVQCDLSETSFIDCDLSSIDLSGSTLCKTA 83
           + +++FQG +L G  L G     +  +G+ L   D  E +  + +L   +L G+ L +  
Sbjct: 129 LEKTNFQGAKLGGAKLEGAYLIGIRFQGANLQGVDFHEANLQEANLQEANLQGAKLERAD 188

Query: 84  FIRCRMPQAVLPTAYLKWLTMIKCDL----------RGSRWQQSHWHLCTVSECDFSATD 133
            I   +  A L  A L+   + + DL          RG   +++H  +  + + DF   +
Sbjct: 189 LIEANLENANLQGANLQGADLQRADLYGANLQGANLRGVDLEKAHLKITDLGKVDFQGAN 248

Query: 134 LRDA 137
           L+ A
Sbjct: 249 LKGA 252