BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2278.p (361 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2370 [S] COG3520 Uncharacterized protein conserved in bacteria... 98 3e-20 PA1661 [S] COG3520 Uncharacterized protein conserved in bacteria... 78 3e-14 RSp0748 [S] COG3520 Uncharacterized protein conserved in bacteri... 76 1e-13 VCA0111 [S] COG3520 Uncharacterized protein conserved in bacteri... 76 1e-13 PA0089 [S] COG3520 Uncharacterized protein conserved in bacteria... 72 2e-12 >PA2370 [S] COG3520 Uncharacterized protein conserved in bacteria Pae Pseudomonas aeruginosa Length = 338 Score = 97.8 bits (242), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 105/218 (48%), Gaps = 4/218 (1%) Query: 81 IDTPNYCIASLMGPLPEPFTEWVRDLKRAGSPAMADFLDIFNQRLNELRFQLKTRHTLGL 140 + TP + + GPLP + EW++ R A A+FLD+F RL L +++ +H + L Sbjct: 80 LSTPVFGLGGPDGPLPYAYQEWLQQRARQKDHAPAEFLDLFQHRLLSLLYRVLRKHRVAL 139 Query: 141 NNQPPVQTEHAAQLAAIMGMGLPHLAVQIPLPQRSWLGLAGLLANCRRSQAALSQTLSVY 200 P T AQL A+ G+ L ++ LP + L L A RRS A + + + Sbjct: 140 GFAVPAATPVQAQLRALSGLLPKALQERLALPDSAVLARTALFAGGRRSLAGFAGLVRQH 199 Query: 201 IGSKVRVEPLIGAWHDI--APQERMALGRRGNVLGRSTLLGRRAWDQAARVRLVIEGLEY 258 G + R++ GAW +I A + R+ G R LGR + G R WD+ A + L + L+ Sbjct: 200 FGVEARLDAYQGAWKEIPAASRSRLQRGGRNLRLGRDAIAGTRTWDEHAGIALSLGPLDA 259 Query: 259 TRFCQLLPPGHAQAANPSERACHFG--LVGLLRLLLNG 294 + P G A S A +FG L L LL++G Sbjct: 260 REAARFFPDGDAHGQLASLAALYFGPDLDCRLSLLVSG 297 >PA1661 [S] COG3520 Uncharacterized protein conserved in bacteria Pae Pseudomonas aeruginosa Length = 335 Score = 78.2 bits (191), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 84/322 (26%), Positives = 142/322 (44%), Gaps = 25/322 (7%) Query: 17 LAQFSRFDSFQLL--RLLQWPPSGSPQAAPVRLRFRADLSAGFGGHEFSALRHAPAPAAD 74 + ++S F + L+ RL Q P +A +L F+A+ S GF G + + Sbjct: 19 IREYSLFQAVLLVMDRLRQEHPGLGDEALYDQLEFQANPSLGFPGSDVDRVEFFEERGML 78 Query: 75 GADVIDIDTPNYCIASLMG---PLPEPFTEWVRDLKRAGSPAMADFLDIFNQRLNELRFQ 131 A + + + L G PLP ++E G+P +FLD+F+ RL+ L Sbjct: 79 RARL------RFNLIGLFGASSPLPAFYSEQALGDSEEGNPTR-NFLDLFHHRLHRLLLP 131 Query: 132 LKTRHTLGLNNQPPVQTEHAAQLAAIMGMGLPHLAVQIPLPQRSWLGLAGLLANCRRSQA 191 + ++ ++ Q +AQL A++G+G + L + + GLL+ S A Sbjct: 132 IWRKYRYRVSFQSGASDAFSAQLFALVGLGGEEIRKARELNWKRLMPYLGLLSLRAHSAA 191 Query: 192 ALSQTLSVYIG-SKVRVEPLIGAWHDIAPQERMALGRRGNVLGRSTLLGRRAWDQAARVR 250 + L Y +++ E I I ++R LG + LG +LG R D++ + R Sbjct: 192 LIESVLRYYFKHAELVAEQCIERRVAILEEQRNRLGLFNSQLGEDAVLGERVRDRSGKFR 251 Query: 251 LVIEGLEYTRFCQLLPPGHAQAANPSERACHFGLVGLLRLLLNGLHDCEVELHVQSASIP 310 + I L++ RF + LP G P L L+R L D ++ L ++ I Sbjct: 252 IHIRQLDWQRFHEFLPIG--PGYQP--------LCALVRFTLRDPLDYDIRLVLRHEEIR 301 Query: 311 AARLQAREQGRLRLGYSAWLGR 332 R+ A Q RLG+++WLGR Sbjct: 302 EFRIGA--QNACRLGWTSWLGR 321 >RSp0748 [S] COG3520 Uncharacterized protein conserved in bacteria Rso Ralstonia solanacearum Length = 363 Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 85/332 (25%), Positives = 137/332 (41%), Gaps = 35/332 (10%) Query: 16 LLAQFSRFDSFQLLRLLQ--WPPSG---SPQAAPVRLRFRADLSAGFGGHEFSALRHAP- 69 LL Q R++ FQ +RLL+ + G S A R+ FR LS F E A+ A Sbjct: 16 LLRQPYRYEFFQAVRLLEQLFARRGNAVSEHALATRVSFRNTLSLSFPPSELQAIEAARV 75 Query: 70 ------------APAADGA-DVIDIDTPNYCIASLMGPLPEPFTEWVRDLKRAGSPAMAD 116 A DG D + I + + + G LP +TE V + + A Sbjct: 76 TPDMLESDAAFIAALEDGVLDTVAITPTFFGMLGVQGALPLRYTEIVAEREAVWRDRAAR 135 Query: 117 -FLDIFNQRLNELRFQLKTRHTLGLNNQPPVQTEHAAQLAAIMGMGLPHLAVQI-----P 170 F DIF+ R L + ++ L + + L ++ G L + P Sbjct: 136 AFFDIFSNRATALFYLAWKKYRLPFQYEVDADRHYLPLLLSLAGAADATLRRDLSDTPGP 195 Query: 171 LPQRSWLGLAGLLANCRRSQAALSQTLSVYIGSKVRVEPLIGAWHDIAPQERMALGRRGN 230 + + G A + + S A L + L+ Y + +RVE +G W+ + P + LG N Sbjct: 196 VHDEALAGYATAIRHRPVSAAYLRRVLADYFRAPMRVEQFVGNWYRVPPSQYSRLGGTNN 255 Query: 231 VLGRSTLLGRRAWDQAARVRLVIEGLEYTRFCQLLPPGHAQAANPSERACHFGLVGLLRL 290 VLG + L G R W + RVR+ + L ++ LP P RA L +L + Sbjct: 256 VLGATALAGARVWQRDLRVRVWVGPLARAQYRNFLP------GAPGARA----LRKMLTI 305 Query: 291 LLNGLHDCEVELHVQSASIPAARLQAREQGRL 322 L + E++L ++ + L A++ GR+ Sbjct: 306 LCGATLEFEIKLILRRQDVAGCTLGAQDSGRI 337 >VCA0111 [S] COG3520 Uncharacterized protein conserved in bacteria Vch Vibrio cholerae Length = 338 Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 79/315 (25%), Positives = 139/315 (44%), Gaps = 25/315 (7%) Query: 23 FDSFQLLRLLQWPPSGSPQAAP----VRLRFRADLSAGFGGHEFSALRHAPAPAADGADV 78 ++ +QL+ LLQ +P++ RL F A+ S GF + AL A D Sbjct: 31 YNFYQLVELLQKLADINPESEEWERDCRLVFSANPSLGFSPSDVMALE-----ARDDERW 85 Query: 79 IDIDTPNYCIASLMGPLPEPFTEWVRDLKRAGSPAMADFLDIFNQRLNELRFQLKTRHTL 138 + + T + ++ PLP E + + G FLD FN RL L +++ ++ Sbjct: 86 VML-TNFFGLSGAQSPLPGFILEQLVTEEPGGYKQ--PFLDFFNNRLINLVYRVWRKYRY 142 Query: 139 GLNNQPPVQTEHAAQLAAIMGMGLPHLAVQIPLPQRSWLGLAGLLANCRRSQAALSQTLS 198 + QP Q +AQL A++G+G P L + P+ L AG LA RS ++ ++ Sbjct: 143 YVRFQPGAQDVFSAQLFALVGLGDPDLRGETPINWCKMLAYAGTLAGRSRSPQVVAGIIA 202 Query: 199 -VYIGSKVRVEPLIGAWHDIAPQERMALGRRGNVLGRSTLLGRRAWDQAARVRLVIEGLE 257 + V + + I +++ALG++ LG T++G D + + + I+ L Sbjct: 203 HCFDLPDVSIRQWVRRRVSIDRSQQLALGKQNARLGMDTVIGESVIDCSGKFIICIKRLS 262 Query: 258 YTRFCQLLPPGHAQAANPSERACHFGLVGLLRLLLNGLHDCEVELHVQSASIPAARLQAR 317 +RF LP G + L L+ +L ++EL + P L R Sbjct: 263 RSRFADFLPSGKE----------YQPLCKLVEFILREQMAYDLELAMDEREAPLFCLDTR 312 Query: 318 EQGRLRLGYSAWLGR 332 + + LG++++LG+ Sbjct: 313 QN--IALGWTSFLGQ 325 >PA0089 [S] COG3520 Uncharacterized protein conserved in bacteria Pae Pseudomonas aeruginosa Length = 348 Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 71/258 (27%), Positives = 110/258 (42%), Gaps = 24/258 (9%) Query: 23 FDSFQLLRLLQWPPSGSPQ-----------AAPVRLRFRADLSAGFGGHEFSALRHAPAP 71 +D FQ LR ++ SPQ P+RL + D + F+ A Sbjct: 25 YDFFQALRRIE---CESPQLPRLGHSVRLADDPLRLGQKPDCT-------FAPSTLASVS 74 Query: 72 AADGADVIDIDTPNYCIASLMGPLPEPFTEWVRDLKRAGSPA-MADFLDIFNQRLNELRF 130 A A V +D + + GPLP TE+ R+ +R + A F+D+F+ RL L + Sbjct: 75 QAGTAAVPRLDQFFFGLTGPNGPLPLHLTEYARERQRNVNDATFKRFMDVFHHRLLTLFY 134 Query: 131 QLKTRHTLGLNNQPPVQTEHAAQLAAIMGMGLPHLAVQIPLPQRSWLGLAGLLANCRRSQ 190 + +++ +A+LAA+ G G+P L + PL + G LA R Sbjct: 135 RAWAEARPEISHDRIDDDYWSARLAALSGRGMPSLRGREPLADTARYYYTGHLAAQTRYP 194 Query: 191 AALSQTLSVYIGSKVRVEPLIGAWHDIAPQERMALGRRGNVLGRSTLLGRRAWDQAARVR 250 L L+ Y V VE +G W ++ ER LG LG LG WD+ + R Sbjct: 195 DGLRVILAEYFEVPVAVEEYVGQWLELP--ERSRLGVDSTSLGMDVCLGTHVWDRQHKFR 252 Query: 251 LVIEGLEYTRFCQLLPPG 268 L + L+ ++ + LP G Sbjct: 253 LRLGPLDLDQYQRFLPDG 270