BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2251.p (243 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1964 [U] COG0811 Biopolymer transport proteins Rso Ralstonia ... 216 2e-56 XF0010 [U] COG0811 Biopolymer transport proteins Xfa Xylella fas... 158 8e-39 NMB1729 [U] COG0811 Biopolymer transport proteins Nme Neisseria ... 149 5e-36 NMA1984 [U] COG0811 Biopolymer transport proteins NmA Neisseria ... 149 5e-36 PA0198 [U] COG0811 Biopolymer transport proteins Pae Pseudomonas... 141 1e-33 >RSc1964 [U] COG0811 Biopolymer transport proteins Rso Ralstonia solanacearum Length = 243 Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 110/232 (47%), Positives = 153/232 (65%), Gaps = 2/232 (0%) Query: 1 MENYGLANVWLQGDVVTRFLITILLGMSSVSWIVMIVKGMANRRLSRIGLQAHKEFWAAH 60 M+ GL+++W QGD+V R +LL MS SWIV++ K RL + A K FW + Sbjct: 1 MQELGLSHLWTQGDIVARGTALLLLLMSLASWIVILTKAWDLIRLKSMAQGAEKRFWHSD 60 Query: 61 SIEGGIAAIGAGTDNPYSNIATAAVEA--HAQKDQPLLEGSTSNTEWVAYCVRNALDEQI 118 + + +G+ DNP+ +A EA H + P L ++W+ +++A+DE + Sbjct: 61 DFDHAMHTLGSPKDNPFYALAQTGREAAQHHRASHPQLHDVMDISDWITRSLKSAIDESV 120 Query: 119 AHLQGGLAVLASIGSTSPFIGLFGTVWGIYHALITIGASGQASLDHVAGPVGESLVMTAV 178 +Q GLAVLAS+GST+PF+GLFGTVWGIYHALI IGA G ++D VAGPVGESL+MTA Sbjct: 121 GQMQSGLAVLASVGSTAPFVGLFGTVWGIYHALIGIGAVGVPTIDKVAGPVGESLIMTAF 180 Query: 179 GLFVAIPAVLGYNYVSRGNRTVAQKLMRFSHQLHVYYVTGNKMKEAQAAKES 230 GL VAIPAVLGYN ++RGN++V KL RF+H LH Y+VTG +++ A ++ Sbjct: 181 GLAVAIPAVLGYNALTRGNKSVIAKLNRFAHDLHAYFVTGARLRPGNARQDD 232 >XF0010 [U] COG0811 Biopolymer transport proteins Xfa Xylella fastidiosa 9a5c Length = 254 Score = 158 bits (400), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 88/212 (41%), Positives = 132/212 (62%), Gaps = 11/212 (5%) Query: 20 LITILLGMSSVSWIVMIVKGMANRRLSRIGLQAHKEFWAAHSIEGGIAAI-GAGTDNPYS 78 ++ IL+ MSS+SW ++ + RL G FW A + + I+A+ P+S Sbjct: 45 VLIILVTMSSLSWYWTVINILRALRLKGAGYLVINAFWKAKNPQEAISAMEKQSASEPFS 104 Query: 79 NIATAAVEAHAQKDQPLLEGST--------SNTEWVAYCVRNALDEQIAHLQGGLAVLAS 130 IA A +A A + EG S +E+V +R A+ + + LQ G+ +LA+ Sbjct: 105 KIALDAAQAAAHHQRT--EGGNAMGLGERLSLSEFVDRALRQAVTRESSKLQSGMTLLAT 162 Query: 131 IGSTSPFIGLFGTVWGIYHALITIGASGQASLDHVAGPVGESLVMTAVGLFVAIPAVLGY 190 +G+T+PF+GL GTVWGIY+ALITIGA+G AS+D VAGPVGE+L+MTA+GLFVAIPAV + Sbjct: 163 VGATAPFVGLLGTVWGIYNALITIGATGSASIDAVAGPVGEALIMTAIGLFVAIPAVFAF 222 Query: 191 NYVSRGNRTVAQKLMRFSHQLHVYYVTGNKMK 222 N+ S+ N + K F+H LH ++ TG++++ Sbjct: 223 NFFSKINSSTIAKFDTFAHDLHDFFATGSRVR 254 >NMB1729 [U] COG0811 Biopolymer transport proteins Nme Neisseria meningitidis MC58 Length = 220 Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 124/208 (59%), Gaps = 4/208 (1%) Query: 9 VWLQGDVVTRFLITILLGMSSVSWIVMIVKGMANRRLSRIGLQAHKEFWAAHSIEGGIAA 68 V+ GD V + ++L MS V+W +++++ + R + + S+ + Sbjct: 6 VFESGDPVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARKGNAAVKRHMRDTLSLNDAVEK 65 Query: 69 IGAGTDNPYSNIATAAVEAHA---QKDQPLLEGSTSNTEWVAYCVRNALDEQIAHLQGGL 125 + A D P S +A A++++ + + L + E++ +RN++ + + G+ Sbjct: 66 VRA-VDAPLSKLAQEALQSYRNYRRNEASELAQALPLNEYLVIQIRNSMAQIMRRFDYGM 124 Query: 126 AVLASIGSTSPFIGLFGTVWGIYHALITIGASGQASLDHVAGPVGESLVMTAVGLFVAIP 185 LASIG+T+PFIGLFGTVWGIYHALI IG SGQ S+ VAGP+GE+LV TA GLFVAIP Sbjct: 125 TALASIGATAPFIGLFGTVWGIYHALINIGQSGQMSIAAVAGPIGEALVATAAGLFVAIP 184 Query: 186 AVLGYNYVSRGNRTVAQKLMRFSHQLHV 213 AVL YN+++RG + + Q L +H LHV Sbjct: 185 AVLAYNFLNRGTKILTQDLDAMAHDLHV 212 >NMA1984 [U] COG0811 Biopolymer transport proteins NmA Neisseria meningitidis Z2491 Length = 220 Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 81/208 (38%), Positives = 124/208 (59%), Gaps = 4/208 (1%) Query: 9 VWLQGDVVTRFLITILLGMSSVSWIVMIVKGMANRRLSRIGLQAHKEFWAAHSIEGGIAA 68 V+ GD V + ++L MS V+W +++++ + R + + S+ + Sbjct: 6 VFESGDPVLIGVFVLMLLMSIVTWCLVVLRCIKLYRARKGNAAVKRHMRDTLSLNDAVEK 65 Query: 69 IGAGTDNPYSNIATAAVEAHA---QKDQPLLEGSTSNTEWVAYCVRNALDEQIAHLQGGL 125 + A D P S +A A++++ + + L + E++ +RN++ + + G+ Sbjct: 66 VRA-VDAPLSKLAQEALQSYRNYRRNEASELAQALPLNEYLVIQIRNSMAQIMRRFDYGM 124 Query: 126 AVLASIGSTSPFIGLFGTVWGIYHALITIGASGQASLDHVAGPVGESLVMTAVGLFVAIP 185 LASIG+T+PFIGLFGTVWGIYHALI IG SGQ S+ VAGP+GE+LV TA GLFVAIP Sbjct: 125 TALASIGATAPFIGLFGTVWGIYHALINIGQSGQMSIAAVAGPIGEALVATAAGLFVAIP 184 Query: 186 AVLGYNYVSRGNRTVAQKLMRFSHQLHV 213 AVL YN+++RG + + Q L +H LHV Sbjct: 185 AVLAYNFLNRGTKILTQDLDAMAHDLHV 212 >PA0198 [U] COG0811 Biopolymer transport proteins Pae Pseudomonas aeruginosa Length = 239 Score = 141 bits (356), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/195 (42%), Positives = 115/195 (58%), Gaps = 3/195 (1%) Query: 20 LITILLGMSSVSWIVMIVKGMANRRLSRIGLQAHKEFWAAHSIE--GGIAAIGAGTDNPY 77 +I +L+G S V+W + +VKG+ R R Q K+FW+A S++ G A G Sbjct: 15 VIWLLVGFSVVTWGLALVKGVQFARQKRQDRQFQKQFWSATSLDSAGEQAQDKQGAGARV 74 Query: 78 SNIATAAVEAHAQKDQPLLEGSTSNTEWVAYCVRNALDEQIAHLQGGLAVLASIGSTSPF 137 + AA++ QP L S ++ + + +R + + L+ GLAVLASIGSTSPF Sbjct: 75 AQAGFAAIQVQ-DNGQPDLAQSINHQDRLERALRQQIQRERRSLESGLAVLASIGSTSPF 133 Query: 138 IGLFGTVWGIYHALITIGASGQASLDHVAGPVGESLVMTAVGLFVAIPAVLGYNYVSRGN 197 IGLFGTVWGI AL I A+G ASL+ VAGP+G +L+ T VG+ VA+PAVL YNY R Sbjct: 134 IGLFGTVWGIMEALKGISAAGSASLETVAGPIGSALIATGVGIAVAVPAVLVYNYFLRRL 193 Query: 198 RTVAQKLMRFSHQLH 212 + A L F+H + Sbjct: 194 KLTAADLDDFAHDFY 208