BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2240.p         (262 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3174 Non COG                                                       148   1e-35
VC1547_1 Non COG                                                       33   0.55 
Zarp [R] COG0666 FOG EcZ Escherichia coli O157:H7 EDL933               33   0.82 
ECs4935 [R] COG0666 FOG Ecs Escherichia coli O157:H7                   33   0.82 
arp [R] COG0666 FOG Eco Escherichia coli K12                           33   0.84 

>RSc3174 Non COG
          Length = 311

 Score =  148 bits (373), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 115/197 (58%), Gaps = 7/197 (3%)

Query: 67  HTWAPEKRFVISSMSDRLVRDGGVINARAHNVPKSNRFELEETSHCSEFGEQLRNGSLGR 126
           + W P  RF +SS SD +V+ G  + A   N+P SNRF ++ TS  S     L    L R
Sbjct: 118 NKWEPADRFQLSSESDSIVKRGARVQAADRNIPSSNRFSMDLTSAQST-ARALAKRPLQR 176

Query: 127 LDRTCRLDLHGHGDMFGFEGDGPFILACKLKRAGLKEVGVIKLQSCRNGKGDFLKEFLEA 186
           L    RLD+H HG+    E      LA KL  AGL+EVGV+K+Q+C  GKG +L+  LE 
Sbjct: 177 LTLESRLDIHAHGNDSYVEDLTAAELAAKLHDAGLEEVGVLKIQACDVGKGHYLQALLEH 236

Query: 187 LSQLGIKVGYVSAPVADLLENRSVAKIAGRE-FTYQALFYMPSKLIRKKYGLFIPETFGL 245
           L+  G+KVGY+  P   L + R+V  + G E +  + + ++P      KY  ++PETFGL
Sbjct: 237 LASRGVKVGYLCGPKGALTDTRTVENLGGGEQYVKKDVSFLPG-----KYVGWLPETFGL 291

Query: 246 KVVKGNIDVRFPGTRYS 262
            V+KGN+DV F GTRY+
Sbjct: 292 NVIKGNVDVAFGGTRYN 308


>VC1547_1 Non COG
          Length = 252

 Score = 33.5 bits (75), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)

Query: 84  LVRDGGVIN-------ARAHNVPKSNRFELEETSHCSEFGEQLRNGSLGRLDRTCRLDLH 136
           L R+ G +        A+A  + + NR + E     S+F +     +L RL+ T RL+  
Sbjct: 44  LQREAGFVQTAQELQAAKAELLAERNRLQKEADQLSSQFSD--NENTLARLEETLRLETG 101

Query: 137 GHGDMFG 143
             G+MFG
Sbjct: 102 SLGEMFG 108


>Zarp [R] COG0666 FOG EcZ Escherichia coli O157:H7 EDL933
          Length = 728

 Score = 32.7 bits (73), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 171 SCRNGKGDFLKEFLEALSQLGIKVGYVSAPVADLLENRSVAKIAG 215
           + +NG  D +K  LEAL  L  ++   ++ + DLL  +S+A+  G
Sbjct: 533 AMQNGHSDIVKVILEALPSLAQEINISASDIVDLLTAKSLARDTG 577


>ECs4935 [R] COG0666 FOG Ecs Escherichia coli O157:H7
          Length = 728

 Score = 32.7 bits (73), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 171 SCRNGKGDFLKEFLEALSQLGIKVGYVSAPVADLLENRSVAKIAG 215
           + +NG  D +K  LEAL  L  ++   ++ + DLL  +S+A+  G
Sbjct: 533 AMQNGHSDIVKVILEALPSLAQEINISASDIVDLLTAKSLARDTG 577


>arp [R] COG0666 FOG Eco Escherichia coli K12
          Length = 728

 Score = 32.7 bits (73), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 26/45 (57%)

Query: 171 SCRNGKGDFLKEFLEALSQLGIKVGYVSAPVADLLENRSVAKIAG 215
           + +NG  D +K  LEAL  L  ++   ++ + DLL  +S+A+  G
Sbjct: 533 AMQNGHSDIVKVILEALPSLAQEINISASDIVDLLTAKSLARDTG 577