BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2219.p         (89 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2412 [S] COG3251 Uncharacterized protein conserved in bacteria...    81   6e-16
MT2445.1 [S] COG3251 Uncharacterized protein conserved in bacter...    70   1e-12
Rv2377c [S] COG3251 Uncharacterized protein conserved in bacteri...    69   3e-12
AGl2317 Non COG                                                        64   1e-10
BS_yukJa [S] COG3251 Uncharacterized protein conserved in bacter...    63   2e-10

>PA2412 [S] COG3251 Uncharacterized protein conserved in bacteria Pae
          Pseudomonas aeruginosa
          Length = 72

 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 50/77 (64%), Gaps = 6/77 (7%)

Query: 3  TSCFDREDETFIVLINHEGQYSIWPHWKKVPGGWTVVNDAQGQPVKGLKKTVSDYIEQHW 62
          TS FDR+D  F V++NHE QYSIWP +K++P GW     +      GLKK    YIE+ W
Sbjct: 2  TSVFDRDDIQFQVVVNHEEQYSIWPEYKEIPQGWRAAGKS------GLKKDCLAYIEEVW 55

Query: 63 TDMRPISLRKWMSEQAA 79
          TDMRP+SLR+ M + A 
Sbjct: 56 TDMRPLSLRQHMDKAAG 72


>MT2445.1 [S] COG3251 Uncharacterized protein conserved in bacteria MtC
          Mycobacterium tuberculosis CDC1551
          Length = 71

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 48/77 (62%), Gaps = 6/77 (7%)

Query: 1  MSTSCFDREDETFIVLINHEGQYSIWPHWKKVPGGWTVVNDAQGQPVKGLKKTVSDYIEQ 60
          MST+ FD ++  F VL+N E Q+S+WP +  +P GW VV+       +  +    DY+E+
Sbjct: 1  MSTNPFDDDNGAFFVLVNDEDQHSLWPVFADIPAGWRVVHG------EASRAACLDYVEK 54

Query: 61 HWTDMRPISLRKWMSEQ 77
          +WTD+RP SLR  M+E 
Sbjct: 55 NWTDLRPKSLRDAMAED 71


>Rv2377c [S] COG3251 Uncharacterized protein conserved in bacteria Mtu
          Mycobacterium tuberculosis H37Rv
          Length = 71

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 6/77 (7%)

Query: 1  MSTSCFDREDETFIVLINHEGQYSIWPHWKKVPGGWTVVNDAQGQPVKGLKKTVSDYIEQ 60
          MST+ FD ++  F VL+N E Q+S+WP +  +P GW VV+       +  +    DY+E+
Sbjct: 1  MSTNPFDDDNGAFFVLVNDEDQHSLWPVFADIPAGWRVVHG------EASRAACLDYVEK 54

Query: 61 HWTDMRPISLRKWMSEQ 77
          +WTD+RP SLR  M E 
Sbjct: 55 NWTDLRPKSLRDAMVED 71


>AGl2317 Non COG
          Length = 85

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 6/71 (8%)

Query: 9  EDETFIVLINHEGQYSIWPHWKKVPGGWTVVNDAQGQPVKGLKKTVSDYIEQHWTDMRPI 68
          ED  + V+I+ E +YSIWP +K VP GW +          G K+   D+IE  WTDMRP+
Sbjct: 14 EDLHYNVVISDEERYSIWPVYKAVPAGWRLSG------FSGSKQACLDHIEVEWTDMRPL 67

Query: 69 SLRKWMSEQAA 79
          SLR+ M  +AA
Sbjct: 68 SLRRLMDGEAA 78


>BS_yukJa [S] COG3251 Uncharacterized protein conserved in bacteria Bsu
          Bacillus subtilis
          Length = 56

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%), Gaps = 6/57 (10%)

Query: 15 VLINHEGQYSIWPHWKKVPGGWTVVNDAQGQPVKGLKKTVSDYIEQHWTDMRPISLR 71
          +L+N EGQYS+WP +  VP GWTVV++ +G      ++   DYI+ HW+DMRP SL+
Sbjct: 1  MLVNEEGQYSLWPGFIDVPSGWTVVHEQKG------REACLDYIQSHWSDMRPNSLK 51