BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2212.p         (204 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3208 [C] COG0778 Nitroreductase Pae Pseudomonas aeruginosa           70   2e-12
XF2007 [C] COG0778 Nitroreductase Xfa Xylella fastidiosa 9a5c          64   2e-10
mll0911 [C] COG0778 Nitroreductase Mlo Mesorhizobium loti              54   3e-07
AGc3200 [C] COG0778 Nitroreductase Atu Agrobacterium tumefaciens...    45   8e-05
SMc01012 [C] COG0778 Nitroreductase Sme Sinorhizobium meliloti         40   0.005

>PA3208 [C] COG0778 Nitroreductase Pae Pseudomonas aeruginosa
          Length = 186

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 74/159 (46%), Gaps = 12/159 (7%)

Query: 24  EQLALIFDAALRLRGQDELRRWEFVFVRGSARQLLGRLLVDAARQRAPAAPESTLQAISS 83
           EQL  +F  ALR     +LR W F+ V G  R+ LG L   A   R P A E  L    +
Sbjct: 24  EQLDRLFRVALRAPDHGQLRPWRFILVEGEGRRALGDLYARALASRQPDAAEEALAKARN 83

Query: 84  NVMQVP-LVIALGTDARQQWQLSGAPEASDEAQMLALGAVALNLINSVHALGYGARWAVG 142
             ++ P LV+A+         L   P+     Q+LA G  A  L+   +A G GA W  G
Sbjct: 84  MPLRAPLLVVAVAC-------LQDHPKVPHAEQLLAAGCAAHGLVLGAYAQGLGAMWRTG 136

Query: 143 AARTADGEHTVSAGLGFRGQVQLAGCLLVGTP-GEVGIP 180
              T   +  V AGLG   Q ++ G + +GTP GE+  P
Sbjct: 137 EMAT---DPVVHAGLGLGEQERIIGFVYLGTPMGELRTP 172


>XF2007 [C] COG0778 Nitroreductase Xfa Xylella fastidiosa 9a5c
          Length = 191

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/156 (28%), Positives = 72/156 (46%), Gaps = 10/156 (6%)

Query: 29  IFDAALRLRGQDELRRWEFVFVRGSARQLLGRLLVDAARQRAPAAPESTLQAISSNVMQV 88
           I  +A+R+    +L  + F+ + G AR+ LG  LV    QR P AP++ L          
Sbjct: 34  ILQSAVRVPDHGKLVPFRFLSITGHAREALGEFLVQRTLQRDPQAPQTVLDKERVRFCHA 93

Query: 89  PLVIALGTDARQQWQLSGAPEASDEAQMLALGAVALNLINSVHALGYGARWAVGAARTAD 148
           P+VI +        +L  A +  ++ Q+L  G V   L+ +  A G+GA+W  G      
Sbjct: 94  PVVITVIA------RLQPAHQVPEQEQLLTTGCVCFALLQAAQAYGFGAQWLTGWMAY-- 145

Query: 149 GEHTVSAGLGFRGQVQLAGCLLVGTPGEVGIPGRRR 184
            + TV+  L       + G + +GTP  + +P R R
Sbjct: 146 -DRTVAEYLHLGPHEHIIGFIHLGTP-RLEVPERER 179


>mll0911 [C] COG0778 Nitroreductase Mlo Mesorhizobium loti
          Length = 194

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 15/154 (9%)

Query: 23  DEQLALIFDAALRLRGQDELRRWEFVFVRGSARQLLGRLLVDAARQRAPAAPESTLQAIS 82
           D ++A +  AA R+     L  W F+  RG  R  +GR L   A QR    PE       
Sbjct: 27  DAEIATMIAAATRVPDHGRLEPWRFILYRGDVRIEIGRKLAALAEQREGPLPEGRRNQEL 86

Query: 83  SNVMQVPLVIALGTDARQQWQLSGAPEASDEAQMLALGAVALNLINSVHALGYGARWAVG 142
           +   + PLVI + +  ++       P+       L+ G  A+NLI S +ALGYG      
Sbjct: 87  ARFSRAPLVIGVVSVPKEN------PKIPQWEMFLSGGMAAMNLIISANALGYGTN---- 136

Query: 143 AARTADGEHTVSAG---LGFRGQVQLAGCLLVGT 173
               ++    V  G   LG   Q ++ G + +G+
Sbjct: 137 --MISNWYSDVPEGRAILGLAPQERVVGFIHIGS 168


>AGc3200 [C] COG0778 Nitroreductase Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 195

 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 25  QLALIFDAALRLRGQDELRRWEFVFVRGSARQLLGRLLVDAARQRAPAAPESTLQAISSN 84
           ++  I   A+R+    +L  W FV  RG  R  L    +  A ++ P       +A  + 
Sbjct: 33  EIEEILRLAVRVPDHGKLAPWRFVVYRGEERVRLSEAALRIALEKNPDLDLQQQEAERTR 92

Query: 85  VMQVPLVIALGTDARQQWQLSGAPEASDEAQMLALGAVALNLINSVHALGYGARWAVGAA 144
             + P+VIA+ + A+  +++   PE     Q+++ GAV LN+I + +A G+ A W     
Sbjct: 93  FTRAPVVIAVISTAKPHFKI---PEWE---QVMSAGAVCLNVIFAANASGFAANW---LT 143

Query: 145 RTADGEHTVSAGLGFRGQVQLAGCLLVGT 173
                +    A +G   + ++AG + +G+
Sbjct: 144 EWLAFDPAFLAEIGVSAEEKVAGYIHIGS 172


>SMc01012 [C] COG0778 Nitroreductase Sme Sinorhizobium meliloti
          Length = 194

 Score = 39.7 bits (91), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 25  QLALIFDAALRLRGQDELRRWEFVFVRGSARQLLGRLLVDAARQRAPAAPESTLQAISSN 84
           ++A +   A R+    +L  W F+  RG  R  +   L   A    P  PE  ++   + 
Sbjct: 31  EVAEMLKLASRVPDHGKLAPWRFIVYRGEERARISAELKKMALAAKPDMPEEMIKVEEAR 90

Query: 85  VMQVPLVIALGTDARQQWQLSGAPEASDEAQMLALGAVALNLINSVHALGYGARWAVGAA 144
           + + P+V+A+ + A   +++   PE     Q ++ GAV LNL+ + +ALGY + W     
Sbjct: 91  LTRAPVVVAVVSKAAPHFKI---PEWE---QQMSAGAVCLNLLMAANALGYASNWLTEWY 144

Query: 145 RTADGEHTVSAGLGFRGQVQLAGCLLVGT 173
              +  + +   LG     ++AG + +GT
Sbjct: 145 AFEERAYPL---LGVAPGEKIAGFIHIGT 170