BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2190.p (222 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc3874 [K] COG1309 Transcriptional regulator Atu Agrobacterium ... 140 2e-33 SMa1299 [K] COG1309 Transcriptional regulator Sme Sinorhizobium ... 132 5e-31 STM1213 [K] COG1309 Transcriptional regulator Sty Salmonella typ... 89 6e-18 VCA0586 [K] COG1309 Transcriptional regulator Vch Vibrio cholerae 81 2e-15 ZycfQ [K] COG1309 Transcriptional regulator EcZ Escherichia coli... 80 3e-15 >AGc3874 [K] COG1309 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 240 Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/212 (40%), Positives = 124/212 (58%), Gaps = 7/212 (3%) Query: 14 LIHNRAMSQLSAKNQRGRPREFDYDEVLERAIRLFRQRGYGATSIADLVEATGLTRGSLY 73 + N + + RGRPREFD D L+ AIR+F +RGY ATS+ DL +A L +GSLY Sbjct: 33 FMTNTTQTHSQEQRHRGRPREFDLDRALDGAIRVFSRRGYHATSVGDLTDAMELAQGSLY 92 Query: 74 KAFKDKKSIYMTAFERYVASGHERIRAIARAEGSGRERVARLLAHYLEQSSGEPGRLGCL 133 KAFKDKK+I++ ERY ER A +G ER+ L Y E+S G G GCL Sbjct: 93 KAFKDKKAIFIATMERYRIVQTERFEAAVAGGETGYERLRAGLMFYAERSHGGVGSDGCL 152 Query: 134 VVATGVEASVLEEEIAQLFEQALKRLEAVLAELIRVGMEDHSIAAQLNAPVAAKSLLCFL 193 VV + + L+++IA + E+A+K E ++A +I G +D S+ + + A+++LC + Sbjct: 153 VVGAAADLAALDDDIAVVVERAVKARERIVARIITEGQKDGSVHSTADPDDLARAMLCMM 212 Query: 194 QGLRVVGKSDAHRPHLNKKMLA---MAMKMLD 222 G+RVVGK+ K M+A +AMK+ D Sbjct: 213 YGMRVVGKT----GRTLKDMVAVVDIAMKLAD 240 >SMa1299 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti Length = 203 Score = 132 bits (333), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 74/196 (37%), Positives = 115/196 (58%), Gaps = 7/196 (3%) Query: 30 GRPREFDYDEVLERAIRLFRQRGYGATSIADLVEATGLTRGSLYKAFKDKKSIYMTAFER 89 GRPREFD ++ L+ AIR+F ++GY TSIA+L GLT GS+YKAF+DK+ +++ A++R Sbjct: 12 GRPREFDINQALDAAIRIFSEKGYHGTSIAELKTEMGLTAGSIYKAFRDKRDVFVAAYDR 71 Query: 90 YVASGHERIRAIARAEGSGRERVARLLAHYLEQSSGEPGRLGCLVVATGVEASVLEEEIA 149 Y + + + +GRE++AR++ Y + GE GR GCL + VE + + EIA Sbjct: 72 YKQIRADLLDQALFSASTGREKIARVVGFYAMSACGETGRRGCLAIGAAVELVLSDAEIA 131 Query: 150 QLFEQALKRLEAVLAELIRVGMEDHSIAAQLNAPVAAKSLLCFLQGLRVVGKSDAHRPHL 209 + ++L A L IR G D SI ++ A +L +LQG+R+ GK+ L Sbjct: 132 DRVGRHNRKLVARLEGFIRDGQLDGSIRQDVDPAATALALFSYLQGVRIAGKT----AEL 187 Query: 210 NKKMLAMA---MKMLD 222 +ML A +++LD Sbjct: 188 ENQMLPSAEAVLRILD 203 >STM1213 [K] COG1309 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 211 Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 91/190 (47%), Gaps = 19/190 (10%) Query: 25 AKNQRGRPREFDYDEVLERAIRLFRQRGYGATSIADLVEATGLTRGSLYKAFKDKKSIYM 84 AK RGRP+ FD + L++A+ LF Q GY ATS+ADLVEATG +LY F +KK ++ Sbjct: 9 AKKSRGRPKVFDREAALDKAMTLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKKGLFR 68 Query: 85 TAFERYV---ASGHERIRAIARAEGSGRER-VARLLAHYLEQ------SSGEPGRLGCLV 134 +RY+ AS HE A+ E+ V L Y + S+ P GC + Sbjct: 69 AVLDRYITRFASKHE-------AQLFCEEKSVESALEDYFTEIAACFTSTDTPA--GCFM 119 Query: 135 VATGVEASVLEEEIAQLFEQALKRLEAVLAELIRVGMEDHSIAAQLNAPVAAKSLLCFLQ 194 + T + +IA+ + E L + +R E I A N A+ + C LQ Sbjct: 120 INTSATLAASSRDIARTVKSRHAMQEQTLIQFLRQRQERGEIPAHCNPQALAEYINCILQ 179 Query: 195 GLRVVGKSDA 204 G+ + + A Sbjct: 180 GMSISAREGA 189 >VCA0586 [K] COG1309 Transcriptional regulator Vch Vibrio cholerae Length = 198 Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 84/176 (47%), Gaps = 2/176 (1%) Query: 30 GRPREFDYDEVLERAIRLFRQRGYGATSIADLVEATGLTRGSLYKAFKDKKSIYMTAFER 89 R FD +E L +A+ LF Q+GY T+I+DLV+ + R SLY AF DK+ +Y A +R Sbjct: 2 ARKCNFDREEKLHQAMTLFWQKGYANTAISDLVDHLQINRFSLYNAFGDKQKLYYEALDR 61 Query: 90 YVASGHERIRAIARAEGSGRERVARLLAHYLEQSSGEPGRLGCLVVATGVEASVLEEEIA 149 Y+ E + + L H+ + G GC + VE + ++E+ Sbjct: 62 YLNLVSSPALKDLELESAAWPELKAFLQHF--AALQREGNRGCFMQNALVEHADTDDEVL 119 Query: 150 QLFEQALKRLEAVLAELIRVGMEDHSIAAQLNAPVAAKSLLCFLQGLRVVGKSDAH 205 L ++A + ++ IAA L A A +L +QG+RV+GK+ H Sbjct: 120 NKGHALFDHLLHLIARALNNAIQQGQIAAHLCADSLAPLVLTQMQGMRVLGKAQRH 175 >ZycfQ [K] COG1309 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 236 Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 5/187 (2%) Query: 21 SQLSAKNQRGRPREFDYDEVLERAIRLFRQRGYGATSIADLVEATGLTRGSLYKAFKDKK 80 S K RGRP+ FD D L++A++LF Q GY ATS+ADLVEATG +LY F +K+ Sbjct: 31 STQCVKKSRGRPKVFDRDAALDKAMKLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKE 90 Query: 81 SIYMTAFERYV---ASGHERIRAIARAEGSGRERVARLLAHYLEQSSGEPGRLGCLVVAT 137 ++ +RY+ A+ HE + E S +A A +G+ GC ++ Sbjct: 91 GLFRAVLDRYIDRFAAKHE--AQLFCEEKSVESALADYFAAIANCFTGKDTPAGCFMINN 148 Query: 138 GVEASVLEEEIAQLFEQALKRLEAVLAELIRVGMEDHSIAAQLNAPVAAKSLLCFLQGLR 197 S +IA + E L + + I + A+ L C +QG+ Sbjct: 149 CTTLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGEIPTHCDVTHLAEFLNCIIQGMS 208 Query: 198 VVGKSDA 204 + + A Sbjct: 209 ISAREGA 215