BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2189.p (223 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3404 [TK] COG0745 Response regulators consisting of a CheY-li... 263 3e-70 RSp1554 [TK] COG0745 Response regulators consisting of a CheY-li... 206 3e-53 PA4776 [TK] COG0745 Response regulators consisting of a CheY-lik... 194 1e-49 ygiX [TK] COG0745 Response regulators consisting of a CheY-like ... 192 4e-49 ZygiX [TK] COG0745 Response regulators consisting of a CheY-like... 192 5e-49 >RSc3404 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 221 Score = 263 bits (671), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 143/220 (65%), Positives = 171/220 (77%), Gaps = 1/220 (0%) Query: 1 MRILLVEDDTMIGEEVRSALKDASYAADWVSDGARALAALAQQDYEAVLLDLGLPGADGL 60 MR+LL+EDD MIG V +AL+DA+YA DWV DG A+ A Q Y+ +LLDLGLPG DG Sbjct: 1 MRVLLIEDDPMIGAVVEAALRDAAYAVDWVRDGRTAVDVSAHQHYDLLLLDLGLPGQDGH 60 Query: 61 SVLRQLRSH-STIPVLIITARDGVQDRIAGLDTGADDYLLKPFDMGELLARLRAVMRRKS 119 +VLR LR+ + +PVLI+TARD V +R+ GLD GADDY+LKPF+M ELLAR+RAV+RR+ Sbjct: 61 AVLRTLRARDNPVPVLILTARDAVDERVRGLDGGADDYVLKPFEMVELLARMRAVLRRRG 120 Query: 120 GAATDVLDNGQLALDVAAKTARWQQQPPVALSAREFALLLALMRRPGAILSRTELEERIY 179 GAA+ VL NG L+LD A R PV LS REFALL ALM RPGAILSR ELEERIY Sbjct: 121 GAASPVLSNGVLSLDPATHEVRAGDGEPVRLSGREFALLQALMLRPGAILSRGELEERIY 180 Query: 180 GWGEEVESNAVEFLIHSLRKKLDRDAIKNVRGMGWMVARN 219 GWG EV SNAVEFLIH+LRKKL ++IKNVRG+GWMV++ Sbjct: 181 GWGHEVASNAVEFLIHALRKKLGAESIKNVRGVGWMVSKG 220 >RSp1554 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 246 Score = 206 bits (524), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 108/230 (46%), Positives = 153/230 (66%), Gaps = 11/230 (4%) Query: 1 MRILLVEDDTMIGEEVRSALKDASYAADWVSDGARALAALAQQD---------YEAVLLD 51 MR+LLVEDD MIGE VR L+ +A DWV DG A+ A+ ++ +LLD Sbjct: 4 MRVLLVEDDDMIGEAVRKGLRQDGFAIDWVRDGEAAVQAIGAPGAASEAGGSMFDLMLLD 63 Query: 52 LGLPGADGLSVLRQLRSHS-TIPVLIITARDGVQDRIAGLDTGADDYLLKPFDMGELLAR 110 LGLP DGL V+ ++R T+P+LI+TARD V DR+AGL+ GADDYL+KPFD+ EL AR Sbjct: 64 LGLPKRDGLDVVHEVRRRGITLPILILTARDAVADRVAGLNAGADDYLVKPFDLQELAAR 123 Query: 111 LRAVMRRKSGAATDVLDNGQLALDVAAKTARWQQQPPVALSAREFALLLALMRRPGAILS 170 + A++RR+ G A ++ +G++ L+ + + P+ LS REFA+L AL+ RPG + S Sbjct: 124 MHALLRRQGGRADPLMRHGEVLLNPVTREV-LRAGMPIKLSGREFAVLHALLSRPGKVWS 182 Query: 171 RTELEERIYGWGEEVESNAVEFLIHSLRKKLDRDAIKNVRGMGWMVARNT 220 +L++ +YGW EEV SN VE IH+LRKKL I+N+RG+G+++ R Sbjct: 183 IAQLQDNLYGWDEEVGSNTVEVYIHALRKKLGSHFIQNIRGVGYVIPREA 232 >PA4776 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 221 Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 103/217 (47%), Positives = 144/217 (66%), Gaps = 2/217 (0%) Query: 1 MRILLVEDDTMIGEEVRSALKDASYAADWVSDGARALAALAQQDYEAVLLDLGLPGADGL 60 MRILL EDD ++G+ +R+ L+ +WV+DG A AL +++ ++LD+GLP GL Sbjct: 1 MRILLAEDDLLLGDGIRAGLRLEGDTVEWVTDGVAAENALVTDEFDLLVLDIGLPRRSGL 60 Query: 61 SVLRQLRSHSTI-PVLIITARDGVQDRIAGLDTGADDYLLKPFDMGELLARLRAVMRRKS 119 +LR LR + PVL++TARD V DR+AGLD+GADDYL KPFD+ EL AR+RA+ RR + Sbjct: 61 DILRNLRHQGLLTPVLLLTARDKVADRVAGLDSGADDYLTKPFDLDELQARVRALTRRTT 120 Query: 120 GAATDVLDNGQLALDVAAKTARWQQQPPVALSAREFALLLALMRRPGAILSRTELEERIY 179 G A L +G+L LD A Q V L+ RE+ALL L+ G +LSR +LE+ +Y Sbjct: 121 GRALPQLVHGELRLDPATHQVTLSGQ-AVELAPREYALLRLLLENSGKVLSRNQLEQSLY 179 Query: 180 GWGEEVESNAVEFLIHSLRKKLDRDAIKNVRGMGWMV 216 GW +VESNA+E +H LR+KL I+ VRG+G+ + Sbjct: 180 GWSGDVESNAIEVHVHHLRRKLGNQLIRTVRGIGYGI 216 >ygiX [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 219 Score = 192 bits (489), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 101/218 (46%), Positives = 141/218 (64%), Gaps = 2/218 (0%) Query: 1 MRILLVEDDTMIGEEVRSALKDASYAADWVSDGARALAALAQQDYEAVLLDLGLPGADGL 60 MRILL+EDD +IG+ +++ L ++ DW + G + AL Y+AV+LDL LPG DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 SVLRQLRSHST-IPVLIITARDGVQDRIAGLDTGADDYLLKPFDMGELLARLRAVMRRKS 119 +LR+ R PVLI+TARD + +R+ GL GADDYL KPF + E+ ARL A+MRR + Sbjct: 61 DILREWREKGQREPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 120 GAATDVLDNGQLALDVAAKTARWQQQPPVALSAREFALLLALMRRPGAILSRTELEERIY 179 G A++ L +G + LD + A +P + L +EFALL LMR G +LSR +EE++Y Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGEP-LTLKPKEFALLELLMRNAGRVLSRKLIEEKLY 179 Query: 180 GWGEEVESNAVEFLIHSLRKKLDRDAIKNVRGMGWMVA 217 W EEV SNAVE +H LR+KL D I+ V G+G+ + Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217 >ZygiX [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain EcZ Escherichia coli O157:H7 EDL933 Length = 219 Score = 192 bits (488), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 100/218 (45%), Positives = 141/218 (64%), Gaps = 2/218 (0%) Query: 1 MRILLVEDDTMIGEEVRSALKDASYAADWVSDGARALAALAQQDYEAVLLDLGLPGADGL 60 MRILL+EDD +IG+ +++ L ++ DW + G + AL Y+AV+LDL LPG DG Sbjct: 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAPYDAVILDLTLPGMDGR 60 Query: 61 SVLRQLRSHST-IPVLIITARDGVQDRIAGLDTGADDYLLKPFDMGELLARLRAVMRRKS 119 +LR+ R PVLI+TARD +++R+ GL GADDYL KPF + E+ ARL A+MRR + Sbjct: 61 DILREWREKGQREPVLILTARDALEERVXGLRLGADDYLCKPFALIEVAARLEALMRRTN 120 Query: 120 GAATDVLDNGQLALDVAAKTARWQQQPPVALSAREFALLLALMRRPGAILSRTELEERIY 179 G A++ L +G + LD + A + P+ L +EFALL LMR G +L R +EE++Y Sbjct: 121 GQASNELRHGNVMLDPGKRIATLAGE-PLTLKPKEFALLELLMRNAGRVLPRKLIEEKLY 179 Query: 180 GWGEEVESNAVEFLIHSLRKKLDRDAIKNVRGMGWMVA 217 W EEV SNAVE +H LR+KL D I+ V G+G+ + Sbjct: 180 TWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLG 217