BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2185.p (225 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1042 [TK] COG0745 Response regulators consisting of a CheY-li... 246 2e-65 PA2809 [TK] COG0745 Response regulators consisting of a CheY-lik... 187 1e-47 RSp0655 [TK] COG0745 Response regulators consisting of a CheY-li... 186 4e-47 CAC0653 [TK] COG0745 Response regulators consisting of a CheY-li... 183 3e-46 RSp0489 [TK] COG0745 Response regulators consisting of a CheY-li... 181 9e-46 >RSp1042 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 227 Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 136/217 (62%), Positives = 163/217 (75%) Query: 1 MHILLVEDDKKAARLLAQGLQEEGFEVVVAHSGEEALAHLGSAFDVAIFDRMLPGIDGLT 60 MHILL+EDD+KAARLLA+GLQEEGFEV VAHS EEA A L A + I D MLPG DG+ Sbjct: 1 MHILLIEDDQKAARLLARGLQEEGFEVAVAHSAEEADASLLVACQLIILDWMLPGKDGIA 60 Query: 61 LCQRVRQAQVQWPILMLTARDALGEKVEGLNAGVDDYLAKPFAFEELLARLHALLRRPSQ 120 LC+ +R+ +Q P+LMLTARDA +++ GL+ G DDYL KPF F+ELLAR+ ALLRR Sbjct: 61 LCRELRERDLQTPVLMLTARDATADRIAGLDTGADDYLTKPFVFDELLARVRALLRRARL 120 Query: 121 LQVMHLQLADLRIDLLAHEVLRDGQRLDLTQKEYAVLVLLVRHAGNVVSRQQLAEQVWHA 180 + DL +D A V R GQ LD+T KEYA+L L+RHAG +VSR QLAE VW A Sbjct: 121 APAAPRVIGDLVLDPNARAVTRGGQALDVTPKEYAILEYLMRHAGQIVSRLQLAEHVWRA 180 Query: 181 DLIAIDNLIDVHIKNLRRKIDTEGRPAMIETLRGQGF 217 DLIAIDNLIDVH+KNLRRK+D G+PA+I T+RGQGF Sbjct: 181 DLIAIDNLIDVHMKNLRRKVDPPGQPALIHTVRGQGF 217 >PA2809 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 226 Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 107/222 (48%), Positives = 145/222 (65%), Gaps = 4/222 (1%) Query: 1 MHILLVEDDKKAARLLAQGLQEEGFEVVVAHSGEEA--LAHLGSAFDVAIFDRMLPGIDG 58 M +L+VED+ + + L QGL E GF V ++ G E LA LG +D+ I D MLPG DG Sbjct: 1 MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLA-LGGDYDLLILDVMLPGRDG 59 Query: 59 LTLCQRVRQAQVQWPILMLTARDALGEKVEGLNAGVDDYLAKPFAFEELLARLHALLRRP 118 + + VR A + P+L LTARDA+ ++V GL G DDYL KPFAF ELLAR+ LLRR Sbjct: 60 WQILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRG 119 Query: 119 SQ-LQVMHLQLADLRIDLLAHEVLRDGQRLDLTQKEYAVLVLLVRHAGNVVSRQQLAEQV 177 SQ LQ LQLADL +DLL V R G+R+DLT KE+A+L LL+R +G V+ + +A QV Sbjct: 120 SQQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQV 179 Query: 178 WHADLIAIDNLIDVHIKNLRRKIDTEGRPAMIETLRGQGFCI 219 W + + N+I+V I+ LR K+D + +I T+RG G+ + Sbjct: 180 WDMNFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVL 221 >RSp0655 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 228 Score = 186 bits (471), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 102/222 (45%), Positives = 142/222 (63%), Gaps = 4/222 (1%) Query: 1 MHILLVEDDKKAARLLAQGLQEEGFEVVVAHSGEEALAHLGSA--FDVAIFDRMLPGIDG 58 M +L+VED+ K L QGL E GF V +A +G + L HL + +D+ + D MLP +DG Sbjct: 1 MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGL-HLATMGDYDLLVLDVMLPDLDG 59 Query: 59 LTLCQRVRQAQVQWPILMLTARDALGEKVEGLNAGVDDYLAKPFAFEELLARLHALLRRP 118 + Q +R A P+L LTARD++G++V+GL G DDYL KPFAF ELLAR+ LLRR Sbjct: 60 WQVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRG 119 Query: 119 SQ-LQVMHLQLADLRIDLLAHEVLRDGQRLDLTQKEYAVLVLLVRHAGNVVSRQQLAEQV 177 S + + +Q+ADL +DL R GQR+ LT KE+A+L LL R G V+ R +A QV Sbjct: 120 STPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQV 179 Query: 178 WHADLIAIDNLIDVHIKNLRRKIDTEGRPAMIETLRGQGFCI 219 W + + N+IDV I+ LR KID + P +I+T+RG G+ + Sbjct: 180 WDMNFDSDTNVIDVAIRRLRAKIDDDFTPKLIQTVRGMGYVL 221 >CAC0653 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Cac Clostridium acetobutylicum Length = 221 Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 139/218 (63%), Gaps = 1/218 (0%) Query: 1 MHILLVEDDKKAARLLAQGLQEEGFEVVVAHSGEEALAHLG-SAFDVAIFDRMLPGIDGL 59 MH+L+VEDD++ + LL +GL++ ++H GE+ L +L +++D I D LP +DG+ Sbjct: 1 MHLLIVEDDEELSILLKKGLKQYNCTCDISHDGEDGLYNLEINSYDAVILDINLPKMDGI 60 Query: 60 TLCQRVRQAQVQWPILMLTARDALGEKVEGLNAGVDDYLAKPFAFEELLARLHALLRRPS 119 T+C+++R + P+LMLTAR ++V GL++G DDYL KPF F+EL ARLHAL+RR Sbjct: 61 TVCRKMRGKGISTPVLMLTARTDTDDRVLGLDSGADDYLGKPFEFKELRARLHALIRRNY 120 Query: 120 QLQVMHLQLADLRIDLLAHEVLRDGQRLDLTQKEYAVLVLLVRHAGNVVSRQQLAEQVWH 179 +++ DL ID A V + + LT +EY +L LL + N+VS +++ E VW Sbjct: 121 NKPSNEIKIKDLNIDTKAKSVKVGEKLITLTAREYDILELLCYNYPNIVSAEEIIEHVWG 180 Query: 180 ADLIAIDNLIDVHIKNLRRKIDTEGRPAMIETLRGQGF 217 + N+I VHI NLRRKI G +IETL+G+G+ Sbjct: 181 DNDNQFSNVIRVHIANLRRKIKCSGGETLIETLKGKGY 218 >RSp0489 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 224 Score = 181 bits (460), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 96/220 (43%), Positives = 139/220 (63%), Gaps = 2/220 (0%) Query: 1 MHILLVEDDKKAARLLAQGLQEEGFEVVVAHSGEEALAH-LGSAFDVAIFDRMLPGIDGL 59 M +L+VED+ KA L +GL E GF +A SG + L + +D+ + D MLPG+DG Sbjct: 1 MRLLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGMDGW 60 Query: 60 TLCQRVRQAQVQWPILMLTARDALGEKVEGLNAGVDDYLAKPFAFEELLARLHALLRRPS 119 + + +R+ + P+L LTARD L ++++GL G DDYL KPFAF EL+AR+H +LRR Sbjct: 61 QVIRELRRRKTT-PVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILRRGP 119 Query: 120 QLQVMHLQLADLRIDLLAHEVLRDGQRLDLTQKEYAVLVLLVRHAGNVVSRQQLAEQVWH 179 + L++ADL ID + V R G+R+DLT KEYA+L LL R G V+SR ++ QVW Sbjct: 120 MRESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQVWD 179 Query: 180 ADLIAIDNLIDVHIKNLRRKIDTEGRPAMIETLRGQGFCI 219 + + N++DV I+ LR K+D +I TLRG G+ + Sbjct: 180 VNFDSNTNVVDVAIRRLRAKVDDPFEHKLIHTLRGMGYVL 219