BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2162.p (546 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll8067_5 [T] COG0642 Signal transduction histidine kinase Mlo M... 234 5e-61 AGl1617_2 [T] COG0642 Signal transduction histidine kinase Atu A... 211 5e-54 CC3225_2 [T] COG0642 Signal transduction histidine kinase Ccr Ca... 201 3e-51 mll2384_2 [T] COG0642 Signal transduction histidine kinase Mlo M... 196 1e-49 ECs5074_1 [T] COG0642 Signal transduction histidine kinase Ecs E... 192 1e-48 >mll8067_5 [T] COG0642 Signal transduction histidine kinase Mlo Mesorhizobium loti Length = 297 Score = 234 bits (596), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 124/251 (49%), Positives = 165/251 (65%), Gaps = 4/251 (1%) Query: 150 DISRRRDAEQALGQARKMEALGQLTGGIAHDFNNLLQVITGYLDIIHLALRSEVPDLGRV 209 +++ R AE+ L Q +KM+A+GQLTGGIAHDFNN+L VI G L+++ L D+GR Sbjct: 27 EVAERSKAEEQLRQVQKMDAVGQLTGGIAHDFNNMLAVIIGGLNLLQRKLSKGETDVGRF 86 Query: 210 ARSADSIRKASGKAAMLTQQLLAFARKQRLEGRTINLNSLTEGFTDLVQRTLGGDIQVRT 269 A + +AA LTQ+LLAF+R+Q L+ IN N L G T+L+ RTLG I+V T Sbjct: 87 VEGA---MDGAHRAAALTQRLLAFSRQQPLKPEPINANRLVGGMTELLMRTLGETIKVET 143 Query: 270 ELAPGLWNCRLDPTQMEVALLNVLINARDAMSGKGTVRIRTSNEDLSSEERALQAGLKPG 329 GLW + DP+Q+E ALLN+ +NARDAM G + I TSN + E A ++ + G Sbjct: 144 AFGAGLWQVKADPSQLESALLNLSVNARDAMPNGGKLTIETSNAYV-DERYARESAIAAG 202 Query: 330 LYVCIAVIDNGPGIPPEILPRVMDPFFTTKDEGKGTGLGLSMVYGFVKQSGGSVRISSGR 389 +V +AV D G G+ P++L + DPF+TTK GKGTGLGLS VYGFV+QSGG+VRI S Sbjct: 203 QFVLVAVTDTGTGMTPDVLAKAFDPFYTTKGVGKGTGLGLSQVYGFVRQSGGNVRIYSEP 262 Query: 390 EGGTTVAIYFP 400 GTT+ IY P Sbjct: 263 GVGTTIKIYLP 273 >AGl1617_2 [T] COG0642 Signal transduction histidine kinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 249 Score = 211 bits (536), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 115/232 (49%), Positives = 142/232 (61%), Gaps = 4/232 (1%) Query: 169 ALGQLTGGIAHDFNNLLQVITGYLDIIHLALRSEVPDLGRVARSADSIRKASGKAAMLTQ 228 ++GQLTGG+AHDFNNLLQVI G L + L +V R R ++ + A L Sbjct: 1 SIGQLTGGVAHDFNNLLQVIAGNLQL----LSKDVIGNERAERRLENALAGVHRGAKLAS 56 Query: 229 QLLAFARKQRLEGRTINLNSLTEGFTDLVQRTLGGDIQVRTELAPGLWNCRLDPTQMEVA 288 QLLAF R+Q LE R IN+ G DL++R+LG I+V + GLWN DP Q+E A Sbjct: 57 QLLAFGRRQALEPRVINIARFVTGMDDLLRRSLGEGIEVEVITSGGLWNTYADPNQVENA 116 Query: 289 LLNVLINARDAMSGKGTVRIRTSNEDLSSEERALQAGLKPGLYVCIAVIDNGPGIPPEIL 348 LLN+ INARDAM G G + I N L + + + G YV +AV D G G+ PEIL Sbjct: 117 LLNLAINARDAMEGHGKLTIEVGNAVLDRDYARKHSEVSAGQYVMLAVTDTGSGMSPEIL 176 Query: 349 PRVMDPFFTTKDEGKGTGLGLSMVYGFVKQSGGSVRISSGREGGTTVAIYFP 400 +V +PFF+TK EGKGTGLGLSMVYGF KQS G V I S GTTV +Y P Sbjct: 177 EKVFEPFFSTKPEGKGTGLGLSMVYGFAKQSSGHVNIYSEVGQGTTVKMYLP 228 >CC3225_2 [T] COG0642 Signal transduction histidine kinase Ccr Caulobacter vibrioides Length = 257 Score = 201 bits (511), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 120/235 (51%), Positives = 148/235 (62%), Gaps = 3/235 (1%) Query: 166 KMEALGQLTGGIAHDFNNLLQVITGYLDIIHLALRSEVPDLGRVARSADSIRKASGKAAM 225 KMEA+GQLTGG+AHDFNNLL I+G ++I R G V R + + A+ +AA Sbjct: 1 KMEAVGQLTGGLAHDFNNLLAGISGSFEMI--GARLAQGRAGEVERYLTAGQGAARRAAA 58 Query: 226 LTQQLLAFARKQRLEGRTINLNSLTEGFTDLVQRTLGGDIQVRTELAPGLWNCRLDPTQM 285 LT +LLAF+R+Q L R + +N L F +LV+RT+G I+V A GLW +D Q+ Sbjct: 59 LTHRLLAFSRRQTLAPRPMVVNRLLPDFVELVRRTVGPSIKVENVAATGLWPTLVDANQL 118 Query: 286 EVALLNVLINARDAMSGKGTVRIRTSNEDLSSEERALQAGLKPGLYVCIAVIDNGPGIPP 345 E ALLN+ INARDAM G + I TSN L A + GL PG YV ++V D G GI Sbjct: 119 ENALLNLCINARDAMPDGGKIMIETSNRWLDGPA-AREHGLDPGQYVSVSVSDTGTGIDK 177 Query: 346 EILPRVMDPFFTTKDEGKGTGLGLSMVYGFVKQSGGSVRISSGREGGTTVAIYFP 400 L RV DPFFTTK G+GTGLGLSMVYGF +QS G VRI S GTTV +Y P Sbjct: 178 ATLERVFDPFFTTKPIGQGTGLGLSMVYGFARQSNGHVRIYSEVGHGTTVCLYLP 232 >mll2384_2 [T] COG0642 Signal transduction histidine kinase Mlo Mesorhizobium loti Length = 329 Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 109/268 (40%), Positives = 166/268 (61%), Gaps = 12/268 (4%) Query: 144 FFSSQLDISRRRDAEQALGQARKMEALGQLTGGIAHDFNNLLQVITGYLDIIHLALRSEV 203 + LD++ RR+ E L Q+++++A+G+LTGG+AHDFNNLL I L + L + + Sbjct: 63 ILGTLLDVTERRELEDQLLQSQRLDAIGKLTGGLAHDFNNLLAAILSGLGL--LERHATL 120 Query: 204 PDLGRVARSADSIRKASGKAAMLTQQLLAFARKQRLEGRTINLNSLTEGFTDLVQRTLGG 263 D R + D R+++ + A L ++LAF+R+Q L+ ++L +L + LV LGG Sbjct: 121 DDQAR--QVVDLTRRSAKQGAELVSRMLAFSRRQNLKPAAVHLATLGDTMNGLVAPVLGG 178 Query: 264 DIQVRTELAPGLWNCRLDPTQMEVALLNVLINARDAMSGKGTVRIRTSNE--DLSSEERA 321 I+ ++ +W +D Q+E+AL+N++ NARDAM GT+ + N +++SE+ Sbjct: 179 LIRFEWKIDNSVWLAHVDVGQLELALMNLVFNARDAMPSGGTITVHAQNRVIEIASED-- 236 Query: 322 LQAGLKPGLYVCIAVIDNGPGIPPEILPRVMDPFFTTKDEGKGTGLGLSMVYGFVKQSGG 381 L PG YV + V D G GIP +IL +V++PFFTTK GKGTGLGLS VYGF+KQSGG Sbjct: 237 ----LPPGDYVVVTVKDTGAGIPQDILAKVVEPFFTTKPVGKGTGLGLSTVYGFIKQSGG 292 Query: 382 SVRISSGREGGTTVAIYFPATHDQVGGG 409 S+RI S GT + ++ P + +Q G Sbjct: 293 SLRIDSAVGRGTAMELWLPRSIEQRAAG 320 >ECs5074_1 [T] COG0642 Signal transduction histidine kinase Ecs Escherichia coli O157:H7 Length = 640 Score = 192 bits (489), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 106/258 (41%), Positives = 169/258 (65%), Gaps = 17/258 (6%) Query: 146 SSQLDISR--RRDAEQALGQARKMEALGQLTGGIAHDFNNLLQVITGYLDIIHLALRSEV 203 ++Q++I++ R+ E+AL ++K++A+GQLTGG+AHDFNNLL VI G L++++ + Sbjct: 375 TTQMEIAQTERQGLEEALLHSQKLKAVGQLTGGLAHDFNNLLAVIIGSLELVN----PDS 430 Query: 204 PDLGRVARSADSIRKASGKAAMLTQQLLAFARKQRLEGRTINLNSLTEGFTDLVQRTLGG 263 PD R+ R+ +A+ + A+LTQ+LLAF+RKQ L + + L +L E ++L++ +L Sbjct: 431 PDAPRIQRAL----QAAERGALLTQRLLAFSRKQSLHPQAVELKTLLEELSELMRHSLPA 486 Query: 264 DIQVRTELAPGLWNCRLDPTQMEVALLNVLINARDAMSGK-GTVRIRTSNEDLSSEERAL 322 + + E W +D +Q+E A++N+++NARDAM G+ G ++IRT N+ ++ Sbjct: 487 TLALEIEAQSPAWPAWIDISQLENAIINLVMNARDAMEGQTGIIKIRTWNQRVTRS---- 542 Query: 323 QAGLKPGLYVCIAVIDNGPGIPPEILPRVMDPFFTTKDEGKGTGLGLSMVYGFVKQSGGS 382 +G + + V + VID+G G+ + +V +PFFTTK G G+GLGLSMVYGFV+QSGG Sbjct: 543 -SGQRQDM-VALEVIDHGCGMSQAVKSQVFEPFFTTKQTGSGSGLGLSMVYGFVRQSGGR 600 Query: 383 VRISSGREGGTTVAIYFP 400 V I S GTTV + P Sbjct: 601 VEIESAPGQGTTVRLQLP 618