BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2153.p (208 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc225 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, s... 296 3e-80 CC1771 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, s... 291 5e-79 SMb21489 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase,... 282 5e-76 mlr6848 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, ... 269 3e-72 STM0441 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, ... 233 2e-61 >AGc225 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 208 Score = 296 bits (757), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 145/208 (69%), Positives = 165/208 (79%), Gaps = 1/208 (0%) Query: 1 MSEAINHTAD-ATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAG 59 M+ + D A P Y HHPENGT +GFW+YLMSDCLIFA LFA YAVLGR+YA Sbjct: 1 MAHTPAQSVDGAEPPVFYLKEDHHPENGTSIGFWLYLMSDCLIFAVLFATYAVLGRSYAA 60 Query: 60 GPTGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFE 119 GP+GA+LFDL LVA+NT LLLSSITYGFAML M+ +K ++T+ WL ITGL G F+ E Sbjct: 61 GPSGADLFDLKLVAINTGFLLLSSITYGFAMLEMEKQKVKSTLIWLGITGLFGLAFLAVE 120 Query: 120 LYEFLHLIHEGAGPSRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRR 179 LYEF HLI EGAGP RS FL++FFALVGTHGLHVTFG IWLV L+ Q+ KHGL AN RR Sbjct: 121 LYEFHHLIEEGAGPQRSAFLSAFFALVGTHGLHVTFGTIWLVTLMVQVAKHGLIAANKRR 180 Query: 180 LMCLSMFWHFLDVVWIGVFTFVYLMGVL 207 LMCLSMFWHFLDV+WIGVF+FVYLMGVL Sbjct: 181 LMCLSMFWHFLDVIWIGVFSFVYLMGVL 208 >CC1771 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Ccr Caulobacter vibrioides Length = 208 Score = 291 bits (746), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 141/207 (68%), Positives = 167/207 (80%), Gaps = 3/207 (1%) Query: 2 SEAINHTADATPSSRYFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGGP 61 S+A++ A Y + HHPENGTLLGFWIYLMSDCLIFA LFACYAVLG++YA GP Sbjct: 5 SQAVS---AADTDQFYLTKEHHPENGTLLGFWIYLMSDCLIFAVLFACYAVLGQSYAAGP 61 Query: 62 TGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFELY 121 +GA+LFDL LVA+NT LLLLSSITYGFAM+A QA++ + + WL +TGLLG GF+ E+Y Sbjct: 62 SGADLFDLKLVAINTGLLLLSSITYGFAMIAAQAREVRPVLIWLGVTGLLGVGFLSLEIY 121 Query: 122 EFLHLIHEGAGPSRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRLM 181 EF HLIHEGA P RS FL++FF LVGTHGLHVTFG+IWLV L+ Q+ + GL RRLM Sbjct: 122 EFAHLIHEGATPQRSAFLSAFFLLVGTHGLHVTFGVIWLVTLMVQVAQRGLGIEMRRRLM 181 Query: 182 CLSMFWHFLDVVWIGVFTFVYLMGVLP 208 CLSMFWHFLDV+WIGVF+FVYL+GVL Sbjct: 182 CLSMFWHFLDVIWIGVFSFVYLLGVLK 208 >SMb21489 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Sme Sinorhizobium meliloti Length = 210 Score = 282 bits (721), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 132/191 (69%), Positives = 155/191 (81%) Query: 17 YFVRHHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGGPTGAELFDLPLVALNT 76 Y HHPE T+LGFW+YLMSDCLIFA LFA +AVLGRNYA GP+ A+LFDLPLVA+NT Sbjct: 19 YLTEEHHPEGSTMLGFWLYLMSDCLIFAVLFATHAVLGRNYAAGPSPADLFDLPLVAVNT 78 Query: 77 ALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFELYEFLHLIHEGAGPSRS 136 ++LL SSITYGFAMLAM+ +++ T+ W+ +T L G F+ E YEF HL+HEGAGP RS Sbjct: 79 SMLLFSSITYGFAMLAMERYEKKATLTWMAVTALFGIAFVGLEFYEFAHLLHEGAGPQRS 138 Query: 137 GFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRLMCLSMFWHFLDVVWIG 196 FL+SFF LVGTHGLHVT GI+W+ VL+ Q+ K GL N RRLMCLSMFWHFLDVVWIG Sbjct: 139 AFLSSFFTLVGTHGLHVTAGIVWMFVLMAQVAKRGLIPENKRRLMCLSMFWHFLDVVWIG 198 Query: 197 VFTFVYLMGVL 207 VF+FVYLMGVL Sbjct: 199 VFSFVYLMGVL 209 >mlr6848 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Mlo Mesorhizobium loti Length = 208 Score = 269 bits (688), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 135/206 (65%), Positives = 154/206 (74%), Gaps = 1/206 (0%) Query: 3 EAINHTADATPSSRYFVRHHHPE-NGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGGP 61 ++I TA P H H E + T+LGFW+YLMSDCLIFA LFA Y VLG NYA GP Sbjct: 2 DSIATTAGTEPVFHLEEEHVHAEGSSTMLGFWLYLMSDCLIFAMLFAAYGVLGANYAAGP 61 Query: 62 TGAELFDLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFELY 121 +LFDL LVA+NT +LLLSSITYGFAML M + T WL +TGL G F+ ELY Sbjct: 62 APKDLFDLDLVAVNTTMLLLSSITYGFAMLTMDKGRVAATQAWLAVTGLFGLAFLSIELY 121 Query: 122 EFLHLIHEGAGPSRSGFLTSFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRLM 181 EF H+IHEGA P RS FL+SFF LVGTHGLHVTFGI+WLV L+ Q+ + GL EAN RR+M Sbjct: 122 EFAHMIHEGATPQRSAFLSSFFTLVGTHGLHVTFGIVWLVTLMTQVARFGLIEANRRRVM 181 Query: 182 CLSMFWHFLDVVWIGVFTFVYLMGVL 207 CLSMFWHFLDVVWIGVFTFVYLMG+L Sbjct: 182 CLSMFWHFLDVVWIGVFTFVYLMGML 207 >STM0441 [C] COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3 Sty Salmonella typhimurium LT2 Length = 204 Score = 233 bits (594), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 113/187 (60%), Positives = 136/187 (72%) Query: 21 HHHPENGTLLGFWIYLMSDCLIFACLFACYAVLGRNYAGGPTGAELFDLPLVALNTALLL 80 HH + GFW+YLMSDC++F+ LFA YAVL AGGPTG ++F+LP V + T LLL Sbjct: 18 HHDAGQNKIFGFWVYLMSDCILFSILFATYAVLVNGTAGGPTGKDIFELPFVLVETFLLL 77 Query: 81 LSSITYGFAMLAMQAKKQQNTIFWLIITGLLGAGFIYFELYEFLHLIHEGAGPSRSGFLT 140 SSITYG A +AM + I WL +T L GAGFI ELYEF HLI G GP RSGFL+ Sbjct: 78 FSSITYGMAAIAMHKNNKSQVISWLALTFLFGAGFIGMELYEFHHLIVNGMGPDRSGFLS 137 Query: 141 SFFALVGTHGLHVTFGIIWLVVLLFQINKHGLTEANGRRLMCLSMFWHFLDVVWIGVFTF 200 +FFALVGTHGLHVT G+IW+ VL+ Q+ + GLT N R+MCLS+FWHFLDV+WI VFT Sbjct: 138 AFFALVGTHGLHVTSGLIWMAVLMVQVARRGLTSTNRTRIMCLSLFWHFLDVIWICVFTV 197 Query: 201 VYLMGVL 207 VYLMG + Sbjct: 198 VYLMGAM 204