BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2140.p         (122 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA0179 [T] COG0784 FOG Pae Pseudomonas aeruginosa                     102   2e-22
VCA1096 [T] COG0784 FOG Vch Vibrio cholerae                            97   1e-20
BB0570 Non COG                                                         91   5e-19
CC0432 [T] COG0784 FOG Ccr Caulobacter vibrioides                      83   2e-16
RSp1409 [T] COG0784 FOG Rso Ralstonia solanacearum                     80   9e-16

>PA0179 [T] COG0784 FOG Pae Pseudomonas aeruginosa
          Length = 121

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 78/117 (66%), Gaps = 1/117 (0%)

Query: 4   ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLNKLKGDPSIKLVVSDVNMPNMDGLT 63
           IL+VDDS+++R  +   LK  G +V  A DG++GL K +   S  LV +D NMPNMDGL+
Sbjct: 5   ILIVDDSASIRQMLSFTLKSAGYEVDEAADGKEGLGKAQSK-SYSLVFTDQNMPNMDGLS 63

Query: 64  MAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120
           +   +R+  G  SV I+MLTTE+S  MK++G++AG  GW+VKPF    +L   +K++
Sbjct: 64  LIRSLRNLAGYRSVPILMLTTESSDAMKQQGRSAGATGWLVKPFDPPKLLEVTRKVL 120


>VCA1096 [T] COG0784 FOG Vch Vibrio cholerae
          Length = 125

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/120 (40%), Positives = 71/120 (59%), Gaps = 1/120 (0%)

Query: 1   MAQILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLNKLKGDPSIKLVVSDVNMPNMD 60
           MA++L VDDS ++R  V   L+  G +V  A DGR+ L K +      +++SDVNMP M 
Sbjct: 7   MAKVLAVDDSISIRQMVSHTLQDAGYEVETAADGREALAKAQ-KARFDVIISDVNMPVMT 65

Query: 61  GLTMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120
           G    + +R +       I+MLTTE SP  K+ GKA G  GW+VKPF  E +L T ++++
Sbjct: 66  GFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKPFNPETLLKTLQRVL 125


>BB0570 Non COG
          Length = 124

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 78/122 (63%), Gaps = 7/122 (5%)

Query: 3   QILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLNKLK-----GDPSIKLVVSDVNMP 57
           +ILV+DD+  +R  V   L++NG  V+ A DG +G+ + K     GD    LV++D+NMP
Sbjct: 4   RILVIDDNRAIRQSVAYILEQNGFGVSEAKDGLEGVLRFKEAVGQGDKDFDLVITDINMP 63

Query: 58  NMDGLTMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFK 117
           N+DG+ + ++IR E G + V I++LTTE+     + G+ AG  GW+VKPF  EA++ T  
Sbjct: 64  NLDGIGVIKQIR-EFG-SFVPILVLTTESEQSKVDEGRKAGATGWLVKPFNPEALMKTIS 121

Query: 118 KL 119
           K+
Sbjct: 122 KI 123


>CC0432 [T] COG0784 FOG Ccr Caulobacter vibrioides
          Length = 121

 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 68/117 (58%), Gaps = 3/117 (2%)

Query: 4   ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLNKLKGD-PSIKLVVSDVNMPNMDGL 62
           +L VDDS T+R  +   L   G +V  AVDG  GL  L    P +  +++D+NMP +DG 
Sbjct: 5   VLTVDDSRTMRDMLRMALAGAGFNVVEAVDGEHGLEVLSAHRPDV--IITDINMPKLDGF 62

Query: 63  TMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKL 119
              E +R +    ++ I++LTTE+ P  K+R + AG  GWIVKPF  E ++   +++
Sbjct: 63  GFIEAVRVDDDYRAIPILVLTTESDPAKKQRAREAGATGWIVKPFNPEKLVDAIRRV 119


>RSp1409 [T] COG0784 FOG Rso Ralstonia solanacearum
          Length = 137

 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 2/120 (1%)

Query: 3   QILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLNKLK--GDPSIKLVVSDVNMPNMD 60
            ILVVDDS+++R  +   L+  G  V  A DG   L  ++   D S  LV++D  MP MD
Sbjct: 5   HILVVDDSTSIRRMIATCLRACGFAVTEATDGAAALEAVQRQADGSHHLVITDQVMPAMD 64

Query: 61  GLTMAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120
           GLT+   +R+    A   I+MLTTE    ++++ +AAG  G++ KPF  + +  +  +L+
Sbjct: 65  GLTLIRALRTLPAYADTPILMLTTEADSTIRDQARAAGATGFLPKPFDPDGLTDSVMQLL 124