BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2137.p         (241 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC1403 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibr...    69   1e-11
BH0565 [NT] COG0840 Methyl-accepting chemotaxis protein Bha Baci...    65   1e-10
PA1423_2 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Ps...    65   1e-10
AGpT246_2 [NT] COG0840 Methyl-accepting chemotaxis protein Atu A...    64   4e-10
PH1970 [NT] COG0840 Methyl-accepting chemotaxis protein Pho Pyro...    63   6e-10

>VC1403 [NT] COG0840 Methyl-accepting chemotaxis protein Vch Vibrio
           cholerae
          Length = 641

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 68/107 (63%), Gaps = 4/107 (3%)

Query: 87  ARLSSQQSDHLSRVKQNCDDSQDTISKLLGLVRTF-ERWHDDMNELIAHNREMHRKNDEF 145
           A  ++Q    L++++Q+  D  + I++++  V+T  ER +D +  +I  + +  + ND  
Sbjct: 108 ATYATQSKQILTKLEQDIVDVANKINEMVSNVQTSSERQNDSVKRMIELSEQAAKINDAV 167

Query: 146 ALIV---NQVVIVALNASIEAARAGVHGRGFAVVAQEVRDLAQRAEK 189
             ++   +Q  ++ALNA+IEA RAG HG+GFAVVA  VR LA++AEK
Sbjct: 168 KQVIHIADQTNLLALNAAIEAGRAGKHGKGFAVVADTVRTLAEKAEK 214



 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 65/114 (57%), Gaps = 14/114 (12%)

Query: 114 LLGLVRTFERWHDDMNELIAH---NREMHRKNDEFALIVNQVVIVALNASIEAARAGVHG 170
           +L +  + +   +++NE+      +R++ +  D  + +  Q  ++A+N ++EAARAG +G
Sbjct: 436 ILAITESTKAATENLNEMANIERISRQIDKIVDGISNVSIQTAMLAVNGAVEAARAGEYG 495

Query: 171 RGFAVVAQEVRDLAQRAEKLSKSYRD---------NLYQNDL--ITTTTFQDLQ 213
           +GFAVV+ ++++LA  A + ++  +D         N+ + DL  I +T  ++ Q
Sbjct: 496 KGFAVVSTDIQNLANDAAENAEQIKDQVKNIQEQINIVRKDLADILSTVMEEAQ 549


>BH0565 [NT] COG0840 Methyl-accepting chemotaxis protein Bha Bacillus
           halodurans
          Length = 401

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 70/119 (58%), Gaps = 9/119 (7%)

Query: 91  SQQSDHLSRV--------KQNCDDSQDTISKLLGLVRTFERWHDDMNELIAHNREMHRKN 142
           SQ+S+ +S +        ++  +  +D++ K+  L +T    +D +N+L   + E+    
Sbjct: 142 SQRSNEISELSNTTLDLTQEGSEKLKDSLEKMKQLNQTINTTYDAINKLGEKSHEIGMIV 201

Query: 143 DEFALIVNQVVIVALNASIEAARAGVHGRGFAVVAQEVRDLAQRAEKLSKSYRDNLYQN 201
                I  Q+ ++ALNASIEAARAG HG+GFAVVA EVR LA+++ + S S   N+ +N
Sbjct: 202 KVITGISEQINLLALNASIEAARAGEHGKGFAVVADEVRKLAEQSRQ-SSSEVSNIVKN 259


>PA1423_2 [NT] COG0840 Methyl-accepting chemotaxis protein Pae Pseudomonas
           aeruginosa
          Length = 195

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 60/106 (56%)

Query: 108 QDTISKLLGLVRTFERWHDDMNELIAHNREMHRKNDEFALIVNQVVIVALNASIEAARAG 167
           Q  + ++L +  T +    ++ EL  H++++    +    I  Q  ++ALNA+IEAARAG
Sbjct: 45  QSAVEEMLKIANTLDASSLNIGELSQHSQQITSIVNTIREIAEQTNLLALNAAIEAARAG 104

Query: 168 VHGRGFAVVAQEVRDLAQRAEKLSKSYRDNLYQNDLITTTTFQDLQ 213
             GRGFAVVA EVR LA+R  K +K   D + +    T +   D+Q
Sbjct: 105 DQGRGFAVVADEVRQLAERTSKSTKEIADMIGRIQTGTRSVIDDMQ 150


>AGpT246_2 [NT] COG0840 Methyl-accepting chemotaxis protein Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 322

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 25/186 (13%)

Query: 50  LVQQQEQWAAHQQHLEQERLAAQDHMAELRRDSEAMLARLSSQQSDHLSRVKQNCDDSQD 109
           L ++ EQ AA  +    E  AA + +    +DS    +R + +    ++R +++ + S +
Sbjct: 62  LAKRTEQQAASVE----ETAAALEEITTTVKDS----SRRAEEAGQLVARTREHAEHSGE 113

Query: 110 TISKLLGLVRTFERWHDDMNELIAHNREMHRKNDEFALIVNQVVIVALNASIEAARAGVH 169
            +   +G +   E    +++ +I          DE A   N +   ALNA +EAARAG  
Sbjct: 114 VVRDAIGAMDQIETSSREISNIIG-------VIDEIAFQTNHL---ALNAGVEAARAGEA 163

Query: 170 GRGFAVVAQEVRDLAQRAEKLSKSYRDNLYQNDLITTTTFQDLQAGGKMIMGAVIGLDLI 229
           G+GFAVVAQEVR+LAQR+ K +K  +       LIT++  Q +Q+G  ++  A   L  I
Sbjct: 164 GKGFAVVAQEVRELAQRSAKAAKEIK------TLITSSGSQ-VQSGVSLVTKAGSALQEI 216

Query: 230 NKKTRD 235
             +  D
Sbjct: 217 ATQVHD 222


>PH1970 [NT] COG0840 Methyl-accepting chemotaxis protein Pho Pyrococcus
           horikoshii
          Length = 261

 Score = 63.2 bits (152), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 56/102 (54%), Gaps = 3/102 (2%)

Query: 95  DHLSRVKQNCDDSQDTISKLLGLVRTFERWHDDMNELIAHNREMHRKNDEFALIVNQVVI 154
           + LS +    D  Q    + L   +  E +  + N L+ H   + + +D  A +  Q  +
Sbjct: 56  EKLSEIMSELDRFQ---REFLPFFQRLEVFSREFNTLVEHLESVSKISDSIASVAKQTNL 112

Query: 155 VALNASIEAARAGVHGRGFAVVAQEVRDLAQRAEKLSKSYRD 196
           VALNASIEAARAG  GRGFAVVA E+R +A +   L++  ++
Sbjct: 113 VALNASIEAARAGEAGRGFAVVADEIRRMAVQTMNLAREIKE 154