BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2133.p         (117 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ECU08g1230 Non COG                                                     28   3.9  
Cj1144c Non COG                                                        28   5.0  
VC2272 [K] COG1327 Predicted transcriptional regulator, consists...    28   6.1  
msr3035 Non COG                                                        28   6.4  

>ECU08g1230 Non COG
          Length = 446

 Score = 28.5 bits (62), Expect = 3.9,   Method: Composition-based stats.
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 80  WVWDYVWTQMIWLPGNALFLLIWSALAIK 108
           W WD + T+ +W+ G+    L W+ + ++
Sbjct: 151 WFWDRISTRHVWIDGDGKVRLCWADVVLE 179


>Cj1144c Non COG
          Length = 197

 Score = 28.1 bits (61), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)

Query: 62  GPWFYADHLCDCREVVSLWVWDYVWT 87
           GPWF ADH+  C   +  +VWDY  T
Sbjct: 87  GPWFLADHVKKCG--LENFVWDYKRT 110


>VC2272 [K] COG1327 Predicted transcriptional regulator, consists of a
          Zn-ribbon and ATP-cone domains Vch Vibrio cholerae
          Length = 156

 Score = 27.7 bits (60), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 1  MPVQGGNMHIDTLRPCRDQDSLRGIER---HGHQRRTRRWCMA 40
          MP  GGNMH      C + D+     R    GHQ R RR C+A
Sbjct: 1  MPCYGGNMHCPF---CSENDTKVIDSRLVADGHQVRRRRQCLA 40


>msr3035 Non COG
          Length = 89

 Score = 27.7 bits (60), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 1  MPVQGGNMHIDTLRPCRDQ--DSLRGIERHGHQRRTRRWCMA 40
          +P  G  + I T RP R +   S+R IERHG +  T + C A
Sbjct: 6  LPAAGKPLKILTARP-RPEMLISMRRIERHGDEIMTEKTCAA 46