BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2126.p (230 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1437 [TK] COG0745 Response regulators consisting of a CheY-lik... 341 1e-93 YPO2001 [TK] COG0745 Response regulators consisting of a CheY-li... 293 3e-79 RSp0489 [TK] COG0745 Response regulators consisting of a CheY-li... 286 2e-77 PA2809 [TK] COG0745 Response regulators consisting of a CheY-lik... 271 8e-73 RSp0655 [TK] COG0745 Response regulators consisting of a CheY-li... 268 1e-71 >PA1437 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 229 Score = 341 bits (874), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 164/229 (71%), Positives = 199/229 (86%), Gaps = 1/229 (0%) Query: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDVAYNGVDGQHLAIQHDYDVIVLDVMLPGIDGF 60 M++LIVEDE K ++YL +GL+EQG VD+A NG+DG+HLA+ +YDVIVLDVMLPG+DG+ Sbjct: 1 MRVLIVEDEAKTADYLNRGLSEQGFTVDLADNGIDGRHLALHGEYDVIVLDVMLPGVDGY 60 Query: 61 AVLRSLRTVKQTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRV 120 VLR+LR +QTPVIMLTAR+ VEDR++GL +GADDYLIKPFSFLEL+ARLQALTRRG Sbjct: 61 GVLRALRERRQTPVIMLTARERVEDRVRGLREGADDYLIKPFSFLELVARLQALTRRGGN 120 Query: 121 QEA-PQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWD 179 E+ Q+RI DL IDL+SRK FRG R++LTAKE+ALL V+A+R GEILSKTAIAELVWD Sbjct: 121 HESHSQMRIADLSIDLLSRKVFRGNTRLELTAKEYALLCVLAQRSGEILSKTAIAELVWD 180 Query: 180 MNFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPRATADAS 228 +NFD++TNVVEVAIKRLRAK+D PFE KLLHT+RGMGYVLE RA A++ Sbjct: 181 INFDTDTNVVEVAIKRLRAKLDGPFENKLLHTIRGMGYVLENRALAESG 229 >YPO2001 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ype Yersinia pestis Length = 230 Score = 293 bits (749), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 144/224 (64%), Positives = 179/224 (79%), Gaps = 2/224 (0%) Query: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDVAYNGVDGQHLAIQHDYDVIVLDVMLPGIDGF 60 M++L+VEDE+K S Y+ + L+E G VDVA G+DG +LA+++DYD IVLDVMLPG+DG+ Sbjct: 1 MRLLLVEDEEKTSSYINRALSELGFTVDVAATGIDGLYLALEYDYDTIVLDVMLPGMDGY 60 Query: 61 AVLRSLRTVKQTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRV 120 +VL LR KQTPV+ML+AR SV++R+KGL GADDYL KPFS +EL+AR+QAL RR Sbjct: 61 SVLEGLRASKQTPVLMLSARGSVDERVKGLRHGADDYLPKPFSLIELVARIQALLRRRPS 120 Query: 121 Q--EAPQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVW 178 + QL I DL +DL++R+ R G R++LTAKEFALL+++AR QGEILSK IAE VW Sbjct: 121 DGVDVSQLHINDLHLDLLARRVTRAGERLELTAKEFALLSLLARHQGEILSKMMIAEQVW 180 Query: 179 DMNFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPR 222 DMNFDS+ NVVEVAIKRLRAKID P+ KLLHTVRGMGYVLE R Sbjct: 181 DMNFDSDANVVEVAIKRLRAKIDTPYPVKLLHTVRGMGYVLETR 224 >RSp0489 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 224 Score = 286 bits (732), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 137/220 (62%), Positives = 175/220 (79%) Query: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDVAYNGVDGQHLAIQHDYDVIVLDVMLPGIDGF 60 M++LIVEDE K +YL KGLTE G D+A +G DG + A++HDYD+IVLDVMLPG+DG+ Sbjct: 1 MRLLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGMDGW 60 Query: 61 AVLRSLRTVKQTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRV 120 V+R LR K TPV+ LTARD + DR+KGL GADDYL+KPF+F EL+AR+ + RRG + Sbjct: 61 QVIRELRRRKTTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILRRGPM 120 Query: 121 QEAPQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVWDM 180 +E+ L I DL ID I R+ R G RIDLTAKE+ALL ++ARR GE+LS++ I+ VWD+ Sbjct: 121 RESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQVWDV 180 Query: 181 NFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLE 220 NFDSNTNVV+VAI+RLRAK+D PFE KL+HT+RGMGYVL+ Sbjct: 181 NFDSNTNVVDVAIRRLRAKVDDPFEHKLIHTLRGMGYVLD 220 >PA2809 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 226 Score = 271 bits (693), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 134/224 (59%), Positives = 178/224 (79%), Gaps = 2/224 (0%) Query: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDVAYNGVDGQHLAIQHDYDVIVLDVMLPGIDGF 60 MK+LIVEDE ++ +YL +GL E G AVD++ +G +G+ LA+ DYD+++LDVMLPG DG+ Sbjct: 1 MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60 Query: 61 AVLRSLRTVKQT-PVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119 +LRS+R T PV+ LTARD+VEDR++GL GADDYL+KPF+F+ELLAR++ L RRG Sbjct: 61 QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120 Query: 120 VQ-EAPQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVW 178 Q + L++ DL++DL+ R+ R G RIDLTAKEFALL ++ RR GE+L K+ IA VW Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180 Query: 179 DMNFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLEPR 222 DMNFDS+TNV+EVAI+RLRAK+D + Q+L+HTVRGMGYVLE R Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLEER 224 >RSp0655 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 228 Score = 268 bits (684), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 138/222 (62%), Positives = 171/222 (77%), Gaps = 2/222 (0%) Query: 1 MKILIVEDEQKMSEYLCKGLTEQGCAVDVAYNGVDGQHLAIQHDYDVIVLDVMLPGIDGF 60 MK+L+VEDE K EYL +GLTE G VD+A NGVDG HLA DYD++VLDVMLP +DG+ Sbjct: 1 MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATMGDYDLLVLDVMLPDLDGW 60 Query: 61 AVLRSLRTVK-QTPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGR 119 V++SLR PV+ LTARDSV DR+KGL GADDYL+KPF+F ELLAR++ L RRG Sbjct: 61 QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 120 VQEA-PQLRIGDLQIDLISRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVW 178 A +++I DL +DL R+A R G RI LT+KEFALL ++ARR+GE+L ++ IA VW Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 179 DMNFDSNTNVVEVAIKRLRAKIDAPFEQKLLHTVRGMGYVLE 220 DMNFDS+TNV++VAI+RLRAKID F KL+ TVRGMGYVLE Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFTPKLIQTVRGMGYVLE 222