BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2118.p (1007 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll8067_5 [T] COG0642 Signal transduction histidine kinase Mlo M... 290 2e-77 AGl1617_2 [T] COG0642 Signal transduction histidine kinase Atu A... 286 2e-76 SMa1142_2 [T] COG0642 Signal transduction histidine kinase Sme S... 238 6e-62 AGpA755_2 [T] COG0642 Signal transduction histidine kinase Atu A... 238 6e-62 CC2874_2 [T] COG0642 Signal transduction histidine kinase Ccr Ca... 226 3e-58 >mll8067_5 [T] COG0642 Signal transduction histidine kinase Mlo Mesorhizobium loti Length = 297 Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 140/274 (51%), Positives = 197/274 (71%), Gaps = 2/274 (0%) Query: 412 DITERRRAEEALRELNDTLEQRVVEEILERTRAEAALRQMQKMEAVGQLTGGVAHDFNNV 471 +++ERRRAE AL+ LN TLEQRV++E+ ER++AE LRQ+QKM+AVGQLTGG+AHDFNN+ Sbjct: 2 ELSERRRAEAALQTLNSTLEQRVIDEVAERSKAEEQLRQVQKMDAVGQLTGGIAHDFNNM 61 Query: 472 LQIIGGNLQLLQTEPRLDERSRQR-VRTAIGAVDRGAKLSSQLLAFARRQPLQPRSINLE 530 L +I G L LLQ + E R V A+ R A L+ +LLAF+R+QPL+P IN Sbjct: 62 LAVIIGGLNLLQRKLSKGETDVGRFVEGAMDGAHRAAALTQRLLAFSRQQPLKPEPINAN 121 Query: 531 RVVQNMDDLLHRAVGENIEISTVITQDLWNSMLDPNQVENLIINTAINARDAMPNGGRLT 590 R+V M +LL R +GE I++ T LW DP+Q+E+ ++N ++NARDAMPNGG+LT Sbjct: 122 RLVGGMTELLMRTLGETIKVETAFGAGLWQVKADPSQLESALLNLSVNARDAMPNGGKLT 181 Query: 591 LQIDNVQLSDPAFLSQADLAPGDYVQLQISDNGAGMSPEVRERAFEPFFTTKREGEGTGL 650 ++ N + D + ++ +A G +V + ++D G GM+P+V +AF+PF+TTK G+GTGL Sbjct: 182 IETSNAYV-DERYARESAIAAGQFVLVAVTDTGTGMTPDVLAKAFDPFYTTKGVGKGTGL 240 Query: 651 GLSMAYGFVKQSKGHISLHSEPGKGTTIRIYFPR 684 GLS YGFV+QS G++ ++SEPG GTTI+IY PR Sbjct: 241 GLSQVYGFVRQSGGNVRIYSEPGVGTTIKIYLPR 274 >AGl1617_2 [T] COG0642 Signal transduction histidine kinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 249 Score = 286 bits (731), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 130/234 (55%), Positives = 174/234 (74%) Query: 456 AVGQLTGGVAHDFNNVLQIIGGNLQLLQTEPRLDERSRQRVRTAIGAVDRGAKLSSQLLA 515 ++GQLTGGVAHDFNN+LQ+I GNLQLL + +ER+ +R+ A+ V RGAKL+SQLLA Sbjct: 1 SIGQLTGGVAHDFNNLLQVIAGNLQLLSKDVIGNERAERRLENALAGVHRGAKLASQLLA 60 Query: 516 FARRQPLQPRSINLERVVQNMDDLLHRAVGENIEISTVITQDLWNSMLDPNQVENLIINT 575 F RRQ L+PR IN+ R V MDDLL R++GE IE+ + + LWN+ DPNQVEN ++N Sbjct: 61 FGRRQALEPRVINIARFVTGMDDLLRRSLGEGIEVEVITSGGLWNTYADPNQVENALLNL 120 Query: 576 AINARDAMPNGGRLTLQIDNVQLSDPAFLSQADLAPGDYVQLQISDNGAGMSPEVRERAF 635 AINARDAM G+LT+++ N L ++++ G YV L ++D G+GMSPE+ E+ F Sbjct: 121 AINARDAMEGHGKLTIEVGNAVLDRDYARKHSEVSAGQYVMLAVTDTGSGMSPEILEKVF 180 Query: 636 EPFFTTKREGEGTGLGLSMAYGFVKQSKGHISLHSEPGKGTTIRIYFPRCEEDE 689 EPFF+TK EG+GTGLGLSM YGF KQS GH++++SE G+GTT+++Y PR DE Sbjct: 181 EPFFSTKPEGKGTGLGLSMVYGFAKQSSGHVNIYSEVGQGTTVKMYLPRSAADE 234 >SMa1142_2 [T] COG0642 Signal transduction histidine kinase Sme Sinorhizobium meliloti Length = 253 Score = 238 bits (607), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 118/237 (49%), Positives = 164/237 (69%), Gaps = 3/237 (1%) Query: 456 AVGQLTGGVAHDFNNVLQIIGGNLQLLQTEPRL-DERSRQRVRTAIGAVDRGAKLSSQLL 514 AVGQLTGG+AHDFNN+L +I GNL+++ E RL DE+ ++ A A D GAKL++QLL Sbjct: 1 AVGQLTGGLAHDFNNLLTVITGNLEMI--EARLQDEKLMPLLQEAQAAADDGAKLTAQLL 58 Query: 515 AFARRQPLQPRSINLERVVQNMDDLLHRAVGENIEISTVITQDLWNSMLDPNQVENLIIN 574 AF RRQPL P+ +++ +V N LL R +GE IE+STV+ +++D +Q++N ++N Sbjct: 59 AFGRRQPLNPKLVDVGELVTNFSKLLTRTLGETIELSTVVKGSANLALIDVSQLQNTVLN 118 Query: 575 TAINARDAMPNGGRLTLQIDNVQLSDPAFLSQADLAPGDYVQLQISDNGAGMSPEVRERA 634 +NARDAMPNGGRLT+++ L L ++ G YV + ++D G GM+ EV+ A Sbjct: 119 LGLNARDAMPNGGRLTIEVSTTVLDRDYALMLPEVRMGHYVLVAVTDTGVGMTEEVKRHA 178 Query: 635 FEPFFTTKREGEGTGLGLSMAYGFVKQSKGHISLHSEPGKGTTIRIYFPRCEEDEVL 691 FEPF+TTK G GTGLGLSM YGFVKQS GHI L+SEP +G ++R++ P E + L Sbjct: 179 FEPFYTTKGFGAGTGLGLSMVYGFVKQSGGHIQLYSEPDRGASVRLFLPAAEGENQL 235 >AGpA755_2 [T] COG0642 Signal transduction histidine kinase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 310 Score = 238 bits (607), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 140/313 (44%), Positives = 188/313 (60%), Gaps = 26/313 (8%) Query: 406 MIAVSTDITERRRAEEALRELNDTLEQRVVE--------------EILERTRAEAALRQM 451 ++ VS DITER ++EE R LN+TLE+RV E E+ +R RAE LR Sbjct: 2 LVGVSADITERMQSEEQQRHLNETLEERVAERTRELEEAHRLVLAEVSQRERAEEQLRHA 61 Query: 452 QKMEAVGQLTGGVAHDFNNVLQIIGGNLQLLQTEPRLDERSRQRVRTAIGAVDRGAKLSS 511 QKMEA+GQLTGGVAHDFNN+L + GNL+LL+ D ++ + + A+ RGA L+ Sbjct: 62 QKMEAIGQLTGGVAHDFNNLLMAVLGNLELLRKHLTDDAKATRLIDGALQGAQRGASLTQ 121 Query: 512 QLLAFARRQPLQPRSINLERVVQNMDDLLHRAVGENIEISTVITQDLWNSMLDPNQVENL 571 +LLAFARRQ LQ ++L +V NM DLL R+VG I I V + L D NQVE Sbjct: 122 RLLAFARRQDLQVGPVDLAGLVTNMQDLLQRSVGSRIAIEVVAPERLPAVSADANQVELA 181 Query: 572 IINTAINARDAMPNGGRLTLQIDNVQLSDPAFLSQAD-LAPGDYVQLQISDNGAGMSPEV 630 ++N A+NARDAMP+GG T++I + P +D LAPG YV L + D G GM Sbjct: 182 LLNLAVNARDAMPDGG--TIKIGLKEAVQPTV---SDLLAPGRYVVLSVIDQGQGMDAAT 236 Query: 631 RERAFEPFFTTKREGEGTGLGLSMAYGFVKQSKGHISLHSEPGKGTTIRIYFPRC----- 685 ++A EPFF+TK G+GTGLGLSM +G Q G + L S G+GTT ++ P Sbjct: 237 LQKAIEPFFSTKELGKGTGLGLSMVHGLALQLNGQLKLASAVGEGTTADLWIPVSTSQSL 296 Query: 686 -EEDEVLIDDSRD 697 +E +V + D+R+ Sbjct: 297 EKEQDVAVADARN 309 >CC2874_2 [T] COG0642 Signal transduction histidine kinase Ccr Caulobacter vibrioides Length = 286 Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 120/273 (43%), Positives = 168/273 (61%), Gaps = 6/273 (2%) Query: 412 DITERRRAEEALRELNDTLEQRVVEEILERTRAEAALRQMQKMEAVGQLTGGVAHDFNNV 471 D TE ++AE L LN+ LE+RV + ER A+AAL Q QK+EA+GQLTGGVAHDFNN+ Sbjct: 1 DTTEAKQAEAKLTGLNELLEERVTAALAERDAAQAALLQSQKLEAIGQLTGGVAHDFNNL 60 Query: 472 LQIIGGNLQLLQTEPRLDERSRQR-VRTAIGAVDRGAKLSSQLLAFARRQPLQPRSINLE 530 L +I G L +++ P D R R+R + A+ A RG KL+ LLAFARRQPL+P ++ Sbjct: 61 LTVIIGALDVVERHPD-DARRRERMIGAALAAAKRGEKLTQHLLAFARRQPLKPEICRVD 119 Query: 531 RVVQNMDDLLHRAVGENIEISTVITQDLWNSMLDPNQVENLIINTAINARDAMPNGGRLT 590 ++ + LL RA+G+ + + ++ +D Q E ++N +NARDA P GG ++ Sbjct: 120 GLIAESEGLLKRALGDAYTFHLRLGAGVRSARIDAGQFEAALLNLVVNARDATPPGGEVS 179 Query: 591 LQIDNVQLSDPAFLSQADLAPGDYVQLQISDNGAGMSPEVRERAFEPFFTTKREGEGTGL 650 ++ V L + DL PG Y+++ + D G GM RA EPFFTTK GEGTGL Sbjct: 180 IESRPVTLDR----KEGDLEPGQYLRVAVRDTGTGMDAATIARAVEPFFTTKPPGEGTGL 235 Query: 651 GLSMAYGFVKQSKGHISLHSEPGKGTTIRIYFP 683 GLS YGF +QS G + + S PG+G T+ + P Sbjct: 236 GLSQVYGFARQSGGSVLIESTPGQGATVALLLP 268