BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2116.p (300 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value all3275_3 [T] COG0642 Signal transduction histidine kinase Nos N... 206 7e-53 alr3442_2 [T] COG0642 Signal transduction histidine kinase Nos N... 202 1e-51 all0978_3 [T] COG0642 Signal transduction histidine kinase Nos N... 186 6e-47 all0182_2 [T] COG0642 Signal transduction histidine kinase Nos N... 186 7e-47 all1716_5 [T] COG0642 Signal transduction histidine kinase Nos N... 184 2e-46 >all3275_3 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC 7120 Length = 295 Score = 206 bits (523), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 110/247 (44%), Positives = 160/247 (64%), Gaps = 6/247 (2%) Query: 50 QQERQTLLQAERTARAEGQRASRIKEQFVATLSQDLRTPLNAILGWAQYLLRDAADPVKL 109 +QER+ LL E+ AR E +RA+R+K+ F+A LS +LRTPLN ILGWA L + + Sbjct: 27 EQEREYLLMREQIARGEAERANRLKDDFLAVLSHELRTPLNPILGWATLLKKRNLEEATR 86 Query: 110 HKGLQVIERNARLQAQLVEELLDMNRILSGKLRIATEQITLEEVMADAVEEVRSAAVAKT 169 +G++ IERNA+LQ QL+E+LLD++RI GKL + + + L + +A+E VR A AK+ Sbjct: 87 RRGIETIERNAKLQIQLIEDLLDVSRIQQGKLSLNIQSVNLVHTIEEALETVRLAIEAKS 146 Query: 170 IQID-ATSPASGVVLGDRTRLRQILCKLLINAIRFTPPQGRVVLCSHQRQDEIELEVSDT 228 I I A G+V GD RL+QI+ LL NAI+FTPP G++ + + + ++++ D Sbjct: 147 IHIKTALGVNVGMVAGDAARLQQIIWNLLANAIKFTPPAGQIQVVLERVNNSAQIQIQDN 206 Query: 229 GRGLAPALLAHLLE----PDGP-SHAGAGLGLGLAVVRQLVELHGGRLRAESPGPGLGAS 283 G+G++ L ++ E DG + GLGLGLA+V+ L ELHGG ++AES G G+GA Sbjct: 207 GKGISSEFLPYVFEYFRQADGTITRQFGGLGLGLAIVKHLTELHGGTVKAESAGEGMGAI 266 Query: 284 FYVALPL 290 F V LPL Sbjct: 267 FTVNLPL 273 >alr3442_2 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC 7120 Length = 261 Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 109/235 (46%), Positives = 156/235 (66%), Gaps = 6/235 (2%) Query: 63 ARAEGQRASRIKEQFVATLSQDLRTPLNAILGWAQYLLRDAADPVKLHKGLQVIERNARL 122 AR + + A+RIK++F+A LS +LRTPLN ILGW++ L D + L+ IERNA L Sbjct: 2 ARKDAEIANRIKDEFLAVLSHELRTPLNPILGWSKLLRSRQFDAATTDRALETIERNATL 61 Query: 123 QAQLVEELLDMNRILSGKLRIATEQITLEEVMADAVEEVRSAAVAKTIQI-DATSPASGV 181 Q QL+E+LLD++RIL GKL + ++L V+ A++ VR AA AK I+I + P G Sbjct: 62 QTQLIEDLLDVSRILQGKLSLNICPVSLPIVIGAAIDTVRLAAEAKEIKIQNVFDPNLGQ 121 Query: 182 VLGDRTRLRQILCKLLINAIRFTPPQGRVVLCSHQRQDEIELEVSDTGRGLAPALLAHLL 241 V+GD RL+Q++ LL NA++FT P G V + D+ +++V DTG+G+ P L ++ Sbjct: 122 VMGDANRLQQVVWNLLSNAVKFTSPGGTVEIHLKAVNDQAQIQVIDTGKGITPEFLPYVF 181 Query: 242 E----PDGPSHAG-AGLGLGLAVVRQLVELHGGRLRAESPGPGLGASFYVALPLA 291 + DG + GLGLGLA+VRQ+VELHGG ++A+SPG GLGA+F V LPL+ Sbjct: 182 DYFRQADGTTTRNFGGLGLGLAIVRQVVELHGGTVQAKSPGDGLGATFTVNLPLS 236 >all0978_3 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC 7120 Length = 246 Score = 186 bits (472), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 99/224 (44%), Positives = 144/224 (64%), Gaps = 6/224 (2%) Query: 73 IKEQFVATLSQDLRTPLNAILGWAQYLLRDAADPVKLHKGLQVIERNARLQAQLVEELLD 132 IK++F+A LS +LR+PLN ILGW++ L P K+ + L+ IERNA+LQAQL+E+LLD Sbjct: 1 IKDEFLAVLSHELRSPLNPILGWSRILRSKQLSPTKVEQALETIERNAKLQAQLIEDLLD 60 Query: 133 MNRILSGKLRIATEQITLEEVMADAVEEVRSAAVAKTIQIDAT-SPASGVVLGDRTRLRQ 191 ++RIL GK+ + + L +A A+E V+ AA AK I I T P S V+GD+ RL+Q Sbjct: 61 VSRILQGKMTLNVASVNLAATIAAALETVQLAAEAKNIHIQTTLKPISATVVGDQNRLQQ 120 Query: 192 ILCKLLINAIRFTPPQGRVVLCSHQRQDEIELEVSDTGRGLA----PALLAHLLEPDG-P 246 ++ LL NA++FTP G++ + Q +++V D+G+G+A P + + + DG Sbjct: 121 VVWNLLSNAVKFTPSGGQIEVQLEQVNLYAQIQVKDSGKGIAREFLPYVFEYFRQEDGAT 180 Query: 247 SHAGAGLGLGLAVVRQLVELHGGRLRAESPGPGLGASFYVALPL 290 + GLGLGLA+VR ELHGG ++ S G LGA+F V LPL Sbjct: 181 TRQFGGLGLGLAIVRHFTELHGGTVQVSSLGQDLGATFTVRLPL 224 >all0182_2 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC 7120 Length = 251 Score = 186 bits (471), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 99/224 (44%), Positives = 145/224 (64%), Gaps = 6/224 (2%) Query: 73 IKEQFVATLSQDLRTPLNAILGWAQYLLRDAADPVKLHKGLQVIERNARLQAQLVEELLD 132 IK++F+A LS +LRTPLNAILGW++ L DP + + L IERNA LQ QL+E+LLD Sbjct: 1 IKDEFLAVLSHELRTPLNAILGWSKLLQERKLDPTRTFQALATIERNATLQVQLIEDLLD 60 Query: 133 MNRILSGKLRIATEQITLEEVMADAVEEVRSAAVAKTIQIDATSPAS-GVVLGDRTRLRQ 191 ++RIL GKL I ++ L V+ A+E +R AA +K IQ+ P + G V+GD RL+Q Sbjct: 61 ISRILQGKLVINITKVNLVTVILAALETMRLAAESKLIQVLTNFPPNIGQVMGDSARLQQ 120 Query: 192 ILCKLLINAIRFTPPQGRVVLCSHQRQDEIELEVSDTGRGLAPALLAHLLE-----PDGP 246 ++ LL NA++FTP G++ + + + ++ VSDTG+G+ P L ++ + Sbjct: 121 VVWNLLSNAVKFTPNGGKIEVTLDKMEGYAQIVVSDTGKGIQPEFLPYVFDYFRQADSSS 180 Query: 247 SHAGAGLGLGLAVVRQLVELHGGRLRAESPGPGLGASFYVALPL 290 + GLGLGLA+VR++VE+HGG + A+S G GASF V LP+ Sbjct: 181 TRRFGGLGLGLAIVRKIVEIHGGTVTAQSLGEEQGASFTVRLPI 224 >all1716_5 [T] COG0642 Signal transduction histidine kinase Nos Nostoc sp. PCC 7120 Length = 332 Score = 184 bits (468), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 105/258 (40%), Positives = 161/258 (62%), Gaps = 12/258 (4%) Query: 39 QRQTLEAARLQQQERQTLLQAERTARAEGQRASRIKEQFVATLSQDLRTPLNAILGWAQY 98 Q++ LEA ER LL E++AR + A+ K++F++ LS +LR PLN++LGWA Sbjct: 47 QQKQLEA------ERTHLLAQEQSARNAAEAANHAKDEFLSILSHELRNPLNSMLGWANL 100 Query: 99 LLRDAADPVKLHKGLQVIERNARLQAQLVEELLDMNRILSGKLRIATEQITLEEVMADAV 158 L + V +++GL+ IER+A+ Q L+ +LLD++RI SG+LR+ +++ L V+ A+ Sbjct: 101 LRTHQLEEVTVNQGLEAIERSAQAQNHLISDLLDVSRISSGRLRMDAQEVELIPVIEAAI 160 Query: 159 EEVRSAAVAKTIQIDAT-SPASGVVLGDRTRLRQILCKLLINAIRFTPPQGRVVLCSHQR 217 VR AA AK IQI+ P +LGD RL+Q++ LL NAI+FTP +GR+ + Sbjct: 161 AVVRLAAEAKNIQIETKLDPTHTPMLGDPIRLQQVIWNLLSNAIKFTPTKGRIDVTLEYT 220 Query: 218 QDEIELEVSDTGRGLAPALLAHLLE----PDGP-SHAGAGLGLGLAVVRQLVELHGGRLR 272 + +++V DTG G+ L ++ E DG + + GLGLGL++VR LVELHGG + Sbjct: 221 YFQAQIQVKDTGAGIKADFLPYVFERFRQADGTRTRSNQGLGLGLSIVRHLVELHGGTVE 280 Query: 273 AESPGPGLGASFYVALPL 290 ES G G G++F + LP+ Sbjct: 281 VESQGEGQGSTFTIKLPV 298