BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2073.p         (99 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2886 Non COG                                                         59   3e-09
Rv0976c Non COG                                                        54   1e-07
MT1003.1 Non COG                                                       54   1e-07
BMEI1622 Non COG                                                       29   2.1  
Cgl1556 [H] COG0054 Riboflavin synthase beta-chain Cgl Corynebac...    27   8.2  

>PA2886 Non COG
          Length = 600

 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 53/100 (53%), Gaps = 3/100 (3%)

Query: 3   LRDIAHARAGDKGDISNISVIAYRIEDYARLERALSAERV---RAHFAAIVQGEVVRHAL 59
           L  +A AR+GDKG+ SNI V+A R E    +  AL    V     H      G V R  L
Sbjct: 486 LLKLAVARSGDKGNHSNIGVMARRPEYLPWIAEALEEGAVVDWMQHVLDPQTGRVGRWYL 545

Query: 60  PHLGALNFVMQRALGGGVTRSLALDAHGKALSGVMLEIEL 99
           P   +LNF+++ ALGGG   SL +D  GKA +  +LE  +
Sbjct: 546 PGSHSLNFLLENALGGGGVASLRIDPQGKAFAQQLLEFPV 585


>Rv0976c Non COG
          Length = 560

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%)

Query: 6   IAHARAGDKGDISNISVIAYRIEDYARLERALSAERVRAHFAAIVQGEVVRHALPHLGAL 65
           IA AR+GDKG  +N+ V     E +  L   L+ E ++          V RH LP+L AL
Sbjct: 460 IAGARSGDKGGSANVGVWVRTDEQWRWLAHTLTVELLKELLPETAGLVVTRHVLPNLRAL 519

Query: 66  NFVMQRALGGGVTRSLALDAHGKAL 90
           NFV++  LG GV      D   K L
Sbjct: 520 NFVIEAILGQGVAYQARFDPQAKGL 544


>MT1003.1 Non COG
          Length = 560

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 42/85 (49%)

Query: 6   IAHARAGDKGDISNISVIAYRIEDYARLERALSAERVRAHFAAIVQGEVVRHALPHLGAL 65
           IA AR+GDKG  +N+ V     E +  L   L+ E ++          V RH LP+L AL
Sbjct: 460 IAGARSGDKGGSANVGVWVRTDEQWRWLAHTLTVELLKELLPETAGLVVTRHVLPNLRAL 519

Query: 66  NFVMQRALGGGVTRSLALDAHGKAL 90
           NFV++  LG GV      D   K L
Sbjct: 520 NFVIEAILGQGVAYQARFDPQAKGL 544


>BMEI1622 Non COG
          Length = 118

 Score = 29.3 bits (64), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 26 RIEDYARLERALSAERVRAHFAAIVQ--GEVVRHALPHLGALNFVMQ--RALGGGVTRSL 81
          RI  +AR + ++ A R+ AH  A V   G + R AL  L    ++      LGGG  RS 
Sbjct: 23 RILGFAR-KMSIKANRLMAHLCAWVHAAGHITRQALAILAGSGYMKPGSSPLGGGRARSQ 81

Query: 82 ALDAHGK 88
          A   HG+
Sbjct: 82 ARPLHGR 88


>Cgl1556 [H] COG0054 Riboflavin synthase beta-chain Cgl Corynebacterium
           glutamicum
          Length = 159

 Score = 27.3 bits (59), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 8   HARAGDKGDISNISVIAYRIEDYARLERALSAERVRAHFAAIVQGEVVRHALPHLGALNF 67
           H  A D G  +  +V  YR+     L   +  E  R H A +  G VVR   PH    ++
Sbjct: 35  HKHAVDAGRAAGATVSEYRVIGALELPVVVQ-ELARTHDAVVALGCVVRGGTPH---FDY 90

Query: 68  VMQRALGGGVTRSLALDAHGKALSGVM 94
           V   ++  G+TR +ALD      +GV+
Sbjct: 91  VCD-SVTEGLTR-IALDTSTPIGNGVL 115