BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2062.p (229 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1449 [O] COG0602 Organic radical activating enzymes Rso Ralst... 309 3e-84 CC3159 [O] COG0602 Organic radical activating enzymes Ccr Caulob... 277 1e-74 msl8680 [O] COG0602 Organic radical activating enzymes Mlo Mesor... 271 8e-73 PM0184 [O] COG0602 Organic radical activating enzymes Pmu Pasteu... 95 1e-19 HI1189 [O] COG0602 Organic radical activating enzymes Hin Haemop... 92 1e-18 >RSc1449 [O] COG0602 Organic radical activating enzymes Rso Ralstonia solanacearum Length = 212 Score = 309 bits (792), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 146/211 (69%), Positives = 171/211 (81%), Gaps = 1/211 (0%) Query: 19 VTYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGREEDRARAICQFCDTDFVGTDGEN 78 +TY++KEIFYTLQGEGA+ GR AVFCRF+GCNLW+GRE DRA AICQFCDTDFVGTDG Sbjct: 1 MTYAVKEIFYTLQGEGANTGRAAVFCRFAGCNLWSGREADRAAAICQFCDTDFVGTDGTL 60 Query: 79 GGKFKSAEALAAKIDSLWPATYAPSK-YVVFTGGEPLLQLDAALIAAMHAVGFEIAIETN 137 GGK+ +A+ALA + + WPA + VV TGGEPLLQLD LI A+HA GFEIAIETN Sbjct: 61 GGKYPTADALADTVAAQWPAAATGGRPLVVCTGGEPLLQLDRPLIDALHARGFEIAIETN 120 Query: 138 GTIAVPEGVDWICVSPKMGAELKVTRGSELKVVVPQAGQPLAHYETLDFQHFLLQPMDGP 197 GT+AVP+G+DW+CVSPKMGAEL VTRG ELKVV+PQ GQ L YE LDF+HF LQPMDGP Sbjct: 121 GTLAVPDGIDWVCVSPKMGAELVVTRGDELKVVIPQPGQDLDAYERLDFRHFFLQPMDGP 180 Query: 198 QAAANTRLAIEMVKHNPKWKLSIQTHKLLNI 228 A NT LA+E+ + P+W LS+QTHK+L I Sbjct: 181 LARRNTALAVELCQRRPRWHLSLQTHKMLGI 211 >CC3159 [O] COG0602 Organic radical activating enzymes Ccr Caulobacter vibrioides Length = 210 Score = 277 bits (709), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 133/212 (62%), Positives = 159/212 (75%), Gaps = 3/212 (1%) Query: 19 VTYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGREEDRARAICQFCDTDFVGTDGEN 78 +TYS+KEIF TLQGEG AG+ AVFCRFSGCNLW+GRE+DRA+A+C FCDTDFVGTDGEN Sbjct: 1 MTYSVKEIFLTLQGEGGQAGKAAVFCRFSGCNLWSGREQDRAKAVCTFCDTDFVGTDGEN 60 Query: 79 GGKFKSAEALAAKIDSLWPATYAPS-KYVVFTGGEPLLQLDAALIAAMHAVGFEIAIETN 137 GGKF +AE LAA +++ W T P + VV TGGEP LQLD A IAA+HA GF+IA+ETN Sbjct: 61 GGKFATAEDLAAAVEAQW--TGGPDDRLVVCTGGEPFLQLDDAAIAALHARGFQIAVETN 118 Query: 138 GTIAVPEGVDWICVSPKMGAELKVTRGSELKVVVPQAGQPLAHYETLDFQHFLLQPMDGP 197 GTI P GVDWICVSPK A + T G ELK+V PQ + LDF+ F LQPMDGP Sbjct: 119 GTITAPAGVDWICVSPKADAPVVQTSGQELKLVFPQEKAMPERFAALDFERFYLQPMDGP 178 Query: 198 QAAANTRLAIEMVKHNPKWKLSIQTHKLLNIP 229 ANT+LA+ +P+W+LS+QTHK L +P Sbjct: 179 DRDANTQLAVAYCLSHPQWRLSVQTHKYLGLP 210 >msl8680 [O] COG0602 Organic radical activating enzymes Mlo Mesorhizobium loti Length = 211 Score = 271 bits (693), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 124/211 (58%), Positives = 152/211 (72%) Query: 19 VTYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGREEDRARAICQFCDTDFVGTDGEN 78 ++Y++KEIFYTLQGEG +AGR AVFCRF+GCNLW+GRE DRA+A C FCDTDFVG DG Sbjct: 1 MSYAVKEIFYTLQGEGRNAGRAAVFCRFAGCNLWSGREGDRAKAFCGFCDTDFVGVDGPG 60 Query: 79 GGKFKSAEALAAKIDSLWPATYAPSKYVVFTGGEPLLQLDAALIAAMHAVGFEIAIETNG 138 G F +A LA ++ W A ++VV TGGEPLLQ+D L+ A+H + FEIA+ETNG Sbjct: 61 GRHFDTARQLALAVEQAWRGQGAGQRFVVLTGGEPLLQIDEELLEALHCLAFEIAVETNG 120 Query: 139 TIAVPEGVDWICVSPKMGAELKVTRGSELKVVVPQAGQPLAHYETLDFQHFLLQPMDGPQ 198 TI P G+DW+CVSPK A L V G ELK+V PQ G H+E L F+H LLQPMDGP+ Sbjct: 121 TIPTPAGIDWLCVSPKCNARLVVMAGDELKLVYPQIGAEPEHFEVLAFEHLLLQPMDGPE 180 Query: 199 AAANTRLAIEMVKHNPKWKLSIQTHKLLNIP 229 ANT A+ NP+W+LS+QTHK L IP Sbjct: 181 REANTAAAVAYCLANPRWRLSLQTHKFLGIP 211 >PM0184 [O] COG0602 Organic radical activating enzymes Pmu Pasteurella multocida Length = 209 Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 71/223 (31%), Positives = 110/223 (49%), Gaps = 40/223 (17%) Query: 21 YSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGREEDRARAICQFCDTDFVGTDGENGG 80 Y+I EIF +LQGEG + G P++F RF CNL C +CDT + N Sbjct: 11 YAIVEIFESLQGEGFNTGMPSIFVRFGKCNL-----------ACPWCDTPY------NQY 53 Query: 81 KFKSAEALAAKIDSLWPATYAPSKYVVFTGGEP-LLQLDAALIAAMHAVGFEIAIETNGT 139 + + K+ S +K ++ TGGEP ++ L+ A+ A G+ +AIETNG Sbjct: 54 TTWTLSKIVQKVRSF------SAKNIIITGGEPTIVPKIGVLLDALKAEGYFLAIETNGL 107 Query: 140 IAVPEGVDWICVSPKMGAELKVTR-----GSELKVVVPQAGQPLAHYETLDFQ----HFL 190 ++P +D+I SPK + K + E+++V + +A E ++ Q H+ Sbjct: 108 KSIPNQIDYIATSPKRLYQHKYQQKCIPFAHEVRIVADE--NVIAFCEQIEQQIRADHYY 165 Query: 191 LQP--MDGPQAAANTRLAIEMVK---HNPKWKLSIQTHKLLNI 228 L P ++G T I + + PKW+LSIQTHKL+ I Sbjct: 166 LSPCEVNGEMNLLETITQIGRLNQRVNKPKWQLSIQTHKLIGI 208 >HI1189 [O] COG0602 Organic radical activating enzymes Hin Haemophilus influenzae Length = 211 Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 36/222 (16%) Query: 20 TYSIKEIFYTLQGEGAHAGRPAVFCRFSGCNLWTGREEDRARAICQFCDTDFVGTDGENG 79 ++I EIF +LQGEG + G P+VF RF CNL C +CDT + N Sbjct: 12 NFNIVEIFESLQGEGFNTGMPSVFVRFGKCNL-----------DCPWCDTPY------NN 54 Query: 80 GKFKSAEALAAKIDSLWPATYAPSKYVVFTGGEP-LLQLDAALIAAMHAVGFEIAIETNG 138 K S + K+ S SK ++ TGGEP ++ L+ + G+ +AIETNG Sbjct: 55 FKRWSVSQILEKVRSF------SSKNIIITGGEPTIVPKIEYLLEQFKSDGYFLAIETNG 108 Query: 139 TIAVPEGVDWICVSPKMGAELKVTR-----GSELKVVVPQAGQPLAHY--ETLDFQHFLL 191 A+P +D+I SPK K + +E+++V+ + + +++ L Sbjct: 109 LKAIPAQIDYIATSPKSLYAHKYEKRCIPFANEVRIVMDSNMPSFCELIEQKIKAKNYYL 168 Query: 192 QP--MDGPQAAANTRLAIEMVK---HNPKWKLSIQTHKLLNI 228 P +DG T + + + PKW+LS+QTHKL+ I Sbjct: 169 SPCEIDGKMNLLETITLLGQLNQRSNKPKWQLSLQTHKLIGI 210