BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2060.p         (121 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA5314 [R] COG3450 Predicted enzyme of the cupin superfamily Pae...    87   1e-17
AGc2315 [R] COG3450 Predicted enzyme of the cupin superfamily At...    81   5e-16
SMc01810 [R] COG3450 Predicted enzyme of the cupin superfamily S...    75   3e-14
mlr8466 Non COG                                                        69   2e-12
mll3593 Non COG                                                        66   2e-11

>PA5314 [R] COG3450 Predicted enzyme of the cupin superfamily Pae
           Pseudomonas aeruginosa
          Length = 120

 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 2/117 (1%)

Query: 1   MTAITQFRLGAPTPEYDHPREERRLEGNPLRTTWNHFTSASGEMNAGIWACEKGSWRIAF 60
           +  I  F      PE+  P  E+ L+G+P ++  NH+ S  G+ NAGIW    G W + +
Sbjct: 3   IEQIVDFAQANSAPEHYSPAPEKILKGDPKQSVRNHYGSPCGQFNAGIWEGAVGQWTVNY 62

Query: 61  APNKDEYFCVLEGRCRVIDEQGNAAEAGPGDALVIPAGFKGVFEVLEPVRKHYVIVE 117
              + EY  +++G   + D  GNA     GD  VIPAGF+G +EVLE  RK YVI E
Sbjct: 63  --TEHEYCEIIQGVSVLRDRHGNAKTVRAGDRFVIPAGFQGTWEVLEACRKVYVIFE 117


>AGc2315 [R] COG3450 Predicted enzyme of the cupin superfamily Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 113

 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 62/112 (55%), Gaps = 10/112 (8%)

Query: 4   ITQFRLGAPTPEYDHPREERRLEGNPLRTTWNHFTSASGEMNAGIWACEKGSWRIAFAPN 63
           +T    GAP PE       R + G+P  TTWN    ASG + AGIW    G WR+ +  +
Sbjct: 10  VTAVEHGAPAPE-------RLISGDPRFTTWN-LEEASGGIYAGIWQSTPGKWRVVY--D 59

Query: 64  KDEYFCVLEGRCRVIDEQGNAAEAGPGDALVIPAGFKGVFEVLEPVRKHYVI 115
           + EYF +LEG   + ++ G   +  PGD LV+  GF G +EVLE  RK YVI
Sbjct: 60  EWEYFNILEGHSILTEDGGAPRDLRPGDRLVLRPGFTGTWEVLETTRKDYVI 111


>SMc01810 [R] COG3450 Predicted enzyme of the cupin superfamily Sme
           Sinorhizobium meliloti
          Length = 113

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 46/115 (40%), Positives = 61/115 (53%), Gaps = 4/115 (3%)

Query: 1   MTAITQFRLGAPTPEYDHPREERRLEGNPLRTTWNHFTSASGEMNAGIWACEKGSWRIAF 60
           M+ +  F   +   E   P  +R + GNP   TWN F  A G + AGIW    G WRI +
Sbjct: 1   MSHMLNFDPSSLEAEIGAPAPDRLISGNPEFRTWN-FEEAGG-LYAGIWEATPGKWRIVY 58

Query: 61  APNKDEYFCVLEGRCRVIDEQGNAAEAGPGDALVIPAGFKGVFEVLEPVRKHYVI 115
             ++ EYF +L G   V +E G       GD+LV+  GFKG +EV+E  RK YVI
Sbjct: 59  --DEWEYFHILSGHSIVTEEGGVPLHLRAGDSLVLRPGFKGTWEVVETTRKDYVI 111


>mlr8466 Non COG
          Length = 114

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 7/117 (5%)

Query: 1   MTAITQFRLGAPTPEYDHPREERRLEGNPLRTTWNHFTSASGEMNAGIWACEKGSWRIAF 60
           M A          PE   P  +R + G+P   TWN      G + AGIW    G WRI +
Sbjct: 1   MAAFLSVDTKGVEPESGAPAPDRLISGDPKFRTWN-VEERDGGLYAGIWESTPGKWRIVY 59

Query: 61  APNKDEY-FC-VLEGRCRVIDEQGNAAEAGPGDALVIPAGFKGVFEVLEPVRKHYVI 115
               DE+ FC +L G   + +++G A     GD+ V+  GFKG +EVLE  RK YVI
Sbjct: 60  ----DEWEFCHILFGVSVIAEDEGEARTVKAGDSFVLRPGFKGSWEVLETTRKEYVI 112


>mll3593 Non COG
          Length = 117

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 2/91 (2%)

Query: 25  LEGNPLRTTWNHFTSASGEMNAGIWACEKGSWRIAFAPNKDEYFCVLEGRCRVIDEQGNA 84
           +EG+P   T    T+  G++ +G W    G++   +     E+  ++ GR  +  + G  
Sbjct: 26  VEGHPTMQTAVQHTTEDGKVMSGTWRASPGTYHATY--TDYEFVHMIAGRIIITPDGGTP 83

Query: 85  AEAGPGDALVIPAGFKGVFEVLEPVRKHYVI 115
            E GPGDA V+ A FKG ++++EPV KH+V+
Sbjct: 84  VEVGPGDAFVVEADFKGTWKIIEPVTKHFVV 114