BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2034.p (252 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1408 [I] COG0020 Undecaprenyl pyrophosphate synthase Rso Rals... 349 3e-96 NMA0081 [I] COG0020 Undecaprenyl pyrophosphate synthase NmA Neis... 316 3e-86 NMB0186 [I] COG0020 Undecaprenyl pyrophosphate synthase Nme Neis... 315 6e-86 PA3652 [I] COG0020 Undecaprenyl pyrophosphate synthase Pae Pseud... 295 5e-80 HI0920 [I] COG0020 Undecaprenyl pyrophosphate synthase Hin Haemo... 269 5e-72 >RSc1408 [I] COG0020 Undecaprenyl pyrophosphate synthase Rso Ralstonia solanacearum Length = 258 Score = 349 bits (896), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 160/245 (65%), Positives = 200/245 (81%), Gaps = 2/245 (0%) Query: 3 HQSSTLAVPETSAVPRHVAIIMDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERGIE 62 H SSTLAVP+T+ P HVAIIMDGNGRWAT+R LPR+AGH++G+DAVR+ V+A RG+ Sbjct: 2 HISSTLAVPDTADTPHHVAIIMDGNGRWATERHLPRMAGHSRGLDAVRAAVQAADHRGVR 61 Query: 63 FLTLFAFSSENWRRPADEVSVLMRLFMTVLEREVGKMASNGICLKIVGDMSRFDPKLQEM 122 +LTLFAFSSENWRRPA+E+S LM+LFMT L REV K+ +GI L++VGD+S F P++Q M Sbjct: 62 YLTLFAFSSENWRRPAEEISFLMKLFMTALRREVSKLNDSGIRLRVVGDLSAFSPRIQLM 121 Query: 123 AARAEAQTAGNSRLTLTVCANYGGRWDVMQAVSKMVKDKPGVTD--YSEEELAPYLAMAY 180 AEA+TA N LT+T+ ANYGGRWD++QA+ +V D+P + +EE L+PY+A+AY Sbjct: 122 IREAEAKTATNPGLTVTIAANYGGRWDILQAMRALVADQPDIAPEAITEEALSPYMALAY 181 Query: 181 APEPDLFIRTGGEQRISNFLLWQLAYSELYFTETFWPDFDAKALDQAIGSYQQRERRFGR 240 A EPDLFIRTGGEQRISNF+LWQLAYSELYFTE +WPDFDA +D+A Y+ RERRFGR Sbjct: 182 ASEPDLFIRTGGEQRISNFMLWQLAYSELYFTERYWPDFDAAEMDRAFAWYRNRERRFGR 241 Query: 241 TSAQV 245 TSAQ+ Sbjct: 242 TSAQL 246 >NMA0081 [I] COG0020 Undecaprenyl pyrophosphate synthase NmA Neisseria meningitidis Z2491 Length = 248 Score = 316 bits (810), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 140/242 (57%), Positives = 193/242 (79%), Gaps = 2/242 (0%) Query: 4 QSSTLAVPETSAVPRHVAIIMDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERGIEF 63 +SST AV E +A+P+H+A+IMDGNGRWA KRFLPR+ GH +G+DA+ ++V+ CA+ G+++ Sbjct: 2 KSSTQAVLEHTAIPKHIAVIMDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQY 61 Query: 64 LTLFAFSSENWRRPADEVSVLMRLFMTVLEREVGKMASNGICLKIVGDMSRFDPKLQEMA 123 LT+FAFS+ENWRRP DEVS LM LF+ L+++V ++ N + LKI+G RF+ ++ + Sbjct: 62 LTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRRLHENNMRLKILGSRERFNRQILKGI 121 Query: 124 ARAEAQTAGNSRLTLTVCANYGGRWDVMQAVSKMVKDKPGVTDYSEEELAPYLAMAYAPE 183 AEA TA N+ LTL++ A+YGGRWD++QA +K++ + GV++ +E+ LA YL + APE Sbjct: 122 EEAEALTANNTGLTLSIAADYGGRWDILQAANKLIAE--GVSEITEDTLAKYLMLGDAPE 179 Query: 184 PDLFIRTGGEQRISNFLLWQLAYSELYFTETFWPDFDAKALDQAIGSYQQRERRFGRTSA 243 PDLFIRTGGE RISNFLLWQ+AY+ELYFT+ WPDFD KALD A+ S+Q+RERRFGRTS Sbjct: 180 PDLFIRTGGETRISNFLLWQMAYAELYFTDILWPDFDGKALDDAVASFQKRERRFGRTSE 239 Query: 244 QV 245 Q+ Sbjct: 240 QL 241 >NMB0186 [I] COG0020 Undecaprenyl pyrophosphate synthase Nme Neisseria meningitidis MC58 Length = 248 Score = 315 bits (807), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 139/242 (57%), Positives = 193/242 (79%), Gaps = 2/242 (0%) Query: 4 QSSTLAVPETSAVPRHVAIIMDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERGIEF 63 +SST AV E +A+P+H+A+IMDGNGRWA KRFLPR+ GH +G+DA+ ++V+ CA+ G+++ Sbjct: 2 KSSTQAVLEHTAIPKHIAVIMDGNGRWAKKRFLPRIMGHKRGLDALENMVKHCAKLGVQY 61 Query: 64 LTLFAFSSENWRRPADEVSVLMRLFMTVLEREVGKMASNGICLKIVGDMSRFDPKLQEMA 123 LT+FAFS+ENWRRP DEVS LM LF+ L+++V ++ N + LKI+G RF+ ++ + Sbjct: 62 LTVFAFSTENWRRPEDEVSFLMGLFLQALQKQVRRLHENNMRLKILGSRERFNRQILQGI 121 Query: 124 ARAEAQTAGNSRLTLTVCANYGGRWDVMQAVSKMVKDKPGVTDYSEEELAPYLAMAYAPE 183 AEA TA N+ LTL++ A+YGGRWD++QA +K++ + GV++ +E+ LA +L + APE Sbjct: 122 EEAEALTANNTGLTLSIAADYGGRWDILQAANKLIAE--GVSEITEDTLAKHLMLGDAPE 179 Query: 184 PDLFIRTGGEQRISNFLLWQLAYSELYFTETFWPDFDAKALDQAIGSYQQRERRFGRTSA 243 PDLFIRTGGE RISNFLLWQ+AY+ELYFT+ WPDFD KALD A+ S+Q+RERRFGRTS Sbjct: 180 PDLFIRTGGETRISNFLLWQMAYAELYFTDILWPDFDGKALDDAVASFQKRERRFGRTSE 239 Query: 244 QV 245 Q+ Sbjct: 240 QL 241 >PA3652 [I] COG0020 Undecaprenyl pyrophosphate synthase Pae Pseudomonas aeruginosa Length = 251 Score = 295 bits (756), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 142/241 (58%), Positives = 172/241 (71%), Gaps = 4/241 (1%) Query: 16 VPRHVAIIMDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERGIEFLTLFAFSSENWR 75 VPRHVAIIMDGN RWA KR LP VAGH GVDAVR+++E CAE G+E LTLFAFSSENW+ Sbjct: 10 VPRHVAIIMDGNNRWAKKRLLPGVAGHKAGVDAVRAVIEVCAEAGVEVLTLFAFSSENWQ 69 Query: 76 RPADEVSVLMRLFMTVLEREVGKMASNGICLKIVGDMSRFDPKLQEMAARAEAQTAGNSR 135 RPADEVS LM LF+ L REV K+ NGI L+I+GD +RF P+LQ AEA TAGN+R Sbjct: 70 RPADEVSALMELFLVALRREVRKLDENGIRLRIIGDRTRFHPELQAAMREAEAATAGNTR 129 Query: 136 LTLTVCANYGGRWDVMQAVSKMVKDKPG----VTDYSEEELAPYLAMAYAPEPDLFIRTG 191 L V ANYGG+WD++QA ++ ++ G D S E L L P PDL IRTG Sbjct: 130 FLLQVAANYGGQWDIVQAAQRLAREVQGGHLAADDISAELLQGCLVTGDQPLPDLCIRTG 189 Query: 192 GEQRISNFLLWQLAYSELYFTETFWPDFDAKALDQAIGSYQQRERRFGRTSAQVLDQKKA 251 GE RISNFLLWQLAY+ELYF++ FWPDF A+ A+ + +R+RRFG+TS QV + + Sbjct: 190 GEHRISNFLLWQLAYAELYFSDLFWPDFKHAAMRAALADFSKRQRRFGKTSEQVEAEARP 249 Query: 252 S 252 S Sbjct: 250 S 250 >HI0920 [I] COG0020 Undecaprenyl pyrophosphate synthase Hin Haemophilus influenzae Length = 239 Score = 269 bits (687), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 126/234 (53%), Positives = 159/234 (67%), Gaps = 4/234 (1%) Query: 12 ETSAVPRHVAIIMDGNGRWATKRFLPRVAGHAKGVDAVRSIVEACAERGIEFLTLFAFSS 71 + + +P+HVAIIMDGNGRWA ++ R+ GH GV AVR V + G+E LTL+AFSS Sbjct: 5 DQTNIPKHVAIIMDGNGRWAKQKNKMRIFGHTNGVTAVRKAVAYARQIGVEVLTLYAFSS 64 Query: 72 ENWRRPADEVSVLMRLFMTVLEREVGKMASNGICLKIVGDMSRFDPKLQEMAARAEAQTA 131 ENW RP E+S LM LFM L+REV K+ N ICLKI+GD+SRF LQE +AE T Sbjct: 65 ENWSRPEQEISALMSLFMQALDREVKKLHKNNICLKIIGDVSRFSETLQEKIKKAENLTE 124 Query: 132 GNSRLTLTVCANYGGRWDVMQAVS----KMVKDKPGVTDYSEEELAPYLAMAYAPEPDLF 187 N+ LTL + ANYGG WD++QA K+ K++ V+D + +LA AP DL Sbjct: 125 KNTALTLNIAANYGGCWDIIQAAKQIAEKVKKEEMSVSDINNSTFQHHLATQNAPPVDLL 184 Query: 188 IRTGGEQRISNFLLWQLAYSELYFTETFWPDFDAKALDQAIGSYQQRERRFGRT 241 IRT GEQRISNFLLWQ+AY+ELYF++ WPDF+ ++AI SYQQR RRFG T Sbjct: 185 IRTSGEQRISNFLLWQIAYAELYFSDVLWPDFNQLEFNRAIASYQQRHRRFGGT 238