BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2031.p (295 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1405 [J] COG0264 Translation elongation factor Ts Rso Ralston... 422 e-118 NMB2102 [J] COG0264 Translation elongation factor Ts Nme Neisser... 256 6e-68 NMA0327 [J] COG0264 Translation elongation factor Ts NmA Neisser... 256 6e-68 lin1766 [J] COG0264 Translation elongation factor Ts Lin Listeri... 236 6e-62 BS_tsf [J] COG0264 Translation elongation factor Ts Bsu Bacillus... 234 2e-61 >RSc1405 [J] COG0264 Translation elongation factor Ts Rso Ralstonia solanacearum Length = 294 Score = 422 bits (1084), Expect = e-118, Method: Compositional matrix adjust. Identities = 209/280 (74%), Positives = 245/280 (87%), Gaps = 3/280 (1%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MAAITA+MV +LRAKTDAPMMECKKALTEA+G+M KAEEILRVKLG+KA KA++RITAEG Sbjct: 3 MAAITASMVAELRAKTDAPMMECKKALTEAEGNMEKAEEILRVKLGNKAGKAAARITAEG 62 Query: 61 VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120 VI+++I G +GALVE+NCETDFV++ND+F+G AKL+ QNPADVAAL A + D + Sbjct: 63 VIASFIDGTIGALVELNCETDFVSRNDDFLGFANEIAKLIATQNPADVAALSALSIGD-E 121 Query: 121 TLEELRTELIGRIGENMSFRRFQRFETSGKLASYLHGTRIGVVVEFDGADEQVGKDVAMH 180 T+E +RT LIG+IGENM+ RRFQRFE + KLASYLHGTRIGV+V FDG DE KDVAMH Sbjct: 122 TVEAVRTRLIGKIGENMTIRRFQRFEGT-KLASYLHGTRIGVMVAFDG-DEVAAKDVAMH 179 Query: 181 IAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKFLKEVSLFNQ 240 AAMKPVALS+++VPA+LI KERS+A KAAESGKPA+IVAKMV+GSVQK+LKEVSL NQ Sbjct: 180 AAAMKPVALSSDEVPAELIAKERSIAEQKAAESGKPAEIVAKMVEGSVQKYLKEVSLLNQ 239 Query: 241 AFVKNDKQSVEQMLKAANTTVKSFAMYVVGEGIEKKQDDF 280 FVKNDKQ+VEQMLKAANTTVK F ++VVGEGIEKKQDDF Sbjct: 240 PFVKNDKQTVEQMLKAANTTVKGFTLFVVGEGIEKKQDDF 279 >NMB2102 [J] COG0264 Translation elongation factor Ts Nme Neisseria meningitidis MC58 Length = 284 Score = 256 bits (653), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 142/278 (51%), Positives = 180/278 (64%), Gaps = 10/278 (3%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MA ITA MV DLRA T MMECKKAL EA+G+ KAEEILR+K G+KA K + R AEG Sbjct: 1 MAEITAKMVADLRAATGLGMMECKKALVEAEGNFDKAEEILRIKSGAKAGKLAGRTAAEG 60 Query: 61 VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120 V++ I GNVGALVEVNCETDFV K+ F+ AK E+ PA V L + Sbjct: 61 VLAYAINGNVGALVEVNCETDFVAKDAGFVEFANFVAKTAAEKKPASVEEL-------SE 113 Query: 121 TLEELRTELIGRIGENMSFRRFQRFETSGKLASYLHGTRI--GVVVEFDGADEQVGKDVA 178 +E R +I ++GENMS RRFQ +T+ +L +Y+HG GV+VE+ G+ E V + + Sbjct: 114 LVEAERKAIIAKLGENMSVRRFQVIDTANQLVAYIHGALATEGVLVEYKGS-EDVARKIG 172 Query: 179 MHIAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKFLKEVSLF 238 MHI A KP +S +V A+ +EKER + +A SGKPADI AKMV+G ++KFL E++L Sbjct: 173 MHIVAAKPQCVSEAEVDAETVEKERHIYTEQAIASGKPADIAAKMVEGRIRKFLAEITLN 232 Query: 239 NQAFVKNDKQSVEQMLKAANTTVKSFAMYVVGEGIEKK 276 QAFV N Q+V Q K T V SF Y VG+GIEKK Sbjct: 233 GQAFVMNPDQTVAQFSKENGTEVISFVRYKVGDGIEKK 270 >NMA0327 [J] COG0264 Translation elongation factor Ts NmA Neisseria meningitidis Z2491 Length = 284 Score = 256 bits (653), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 142/278 (51%), Positives = 180/278 (64%), Gaps = 10/278 (3%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MA ITA MV DLRA T MMECKKAL EA+G+ KAEEILR+K G+KA K + R AEG Sbjct: 1 MAEITAKMVADLRAATGLGMMECKKALVEAEGNFDKAEEILRIKSGAKAGKLAGRTAAEG 60 Query: 61 VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120 V++ I GNVGALVEVNCETDFV K+ F+ AK E+ PA V L + Sbjct: 61 VLAYAINGNVGALVEVNCETDFVAKDAGFVEFANFVAKTAAEKKPASVEEL-------SE 113 Query: 121 TLEELRTELIGRIGENMSFRRFQRFETSGKLASYLHGTRI--GVVVEFDGADEQVGKDVA 178 +E R +I ++GENMS RRFQ +T+ +L +Y+HG GV+VE+ G+ E V + + Sbjct: 114 LVEAERKAIIAKLGENMSVRRFQVIDTANQLVAYIHGALATEGVLVEYKGS-EDVARKIG 172 Query: 179 MHIAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKFLKEVSLF 238 MHI A KP +S +V A+ +EKER + +A SGKPADI AKMV+G ++KFL E++L Sbjct: 173 MHIVAAKPQCVSEAEVDAETVEKERHIYTEQAIASGKPADIAAKMVEGRIRKFLAEITLN 232 Query: 239 NQAFVKNDKQSVEQMLKAANTTVKSFAMYVVGEGIEKK 276 QAFV N Q+V Q K T V SF Y VG+GIEKK Sbjct: 233 GQAFVMNPDQTVAQFSKENGTEVISFVRYKVGDGIEKK 270 >lin1766 [J] COG0264 Translation elongation factor Ts Lin Listeria innocua Length = 294 Score = 236 bits (601), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 135/292 (46%), Positives = 185/292 (63%), Gaps = 4/292 (1%) Query: 1 MAAITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEG 60 MA ITA MV +LR KT A MM+CKKAL E +GDM KA + LR K +KA+K S R+ +EG Sbjct: 1 MANITAQMVKELREKTGAGMMDCKKALVETEGDMEKAIDYLREKGIAKAAKKSDRVASEG 60 Query: 61 VISTYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGK 120 + ++EVN ETDFV KND F LV+A AK ++E P + ++P+G+ Sbjct: 61 MTHVISNEKHAVVLEVNAETDFVAKNDNFQQLVDALAKQILEVRPDSLEDALKTEMPNGQ 120 Query: 121 TLEELRTELIGRIGENMSFRRFQRFETSGKLA--SYLH-GTRIGVVVEFDG-ADEQVGKD 176 T+++ TE I +IGEN+S RRF+ E + A Y+H RIGV+ +G D V KD Sbjct: 121 TVQDYITEAITKIGENISLRRFEVKEKADNSAFGEYIHMNGRIGVLTLLEGTTDTTVAKD 180 Query: 177 VAMHIAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKFLKEVS 236 VAMHIAA+ P +S E V + +E E+ V +A GKPA+IV KMV+G ++K+L E+S Sbjct: 181 VAMHIAAINPKYISREDVSTEEVEHEKEVLTQQALNEGKPANIVEKMVEGRLKKYLSEIS 240 Query: 237 LFNQAFVKNDKQSVEQMLKAANTTVKSFAMYVVGEGIEKKQDDFAAEVAAQV 288 L +Q FVKN +V + +K + V SF + VGEGIEKK+D+F EV +QV Sbjct: 241 LEDQPFVKNPDITVGEYVKQSGGKVVSFVRFEVGEGIEKKEDNFVEEVMSQV 292 >BS_tsf [J] COG0264 Translation elongation factor Ts Bsu Bacillus subtilis Length = 293 Score = 234 bits (597), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 136/290 (46%), Positives = 185/290 (63%), Gaps = 4/290 (1%) Query: 3 AITAAMVGDLRAKTDAPMMECKKALTEADGDMAKAEEILRVKLGSKASKASSRITAEGVI 62 AITA V +LR KT A MM+CKKALTE DGDM KA ++LR K +KA+K + RI AEG Sbjct: 2 AITAQQVKELREKTGAGMMDCKKALTETDGDMDKAIDLLREKGIAKAAKKADRIAAEGST 61 Query: 63 STYIAGNVGALVEVNCETDFVTKNDEFIGLVEAAAKLVVEQNPADVAALGACKLPDGKTL 122 GN G ++EVN ETDFV KN+ F L+ A ++ PADV K+ +G T+ Sbjct: 62 LIKTDGNKGVILEVNSETDFVAKNEGFKELLNTLADHLLANTPADVEEAMGQKMENGSTV 121 Query: 123 EELRTELIGRIGENMSFRRFQRF--ETSGKLASYLH-GTRIGVVVEFDG-ADEQVGKDVA 178 EE T + +IGE ++ RRF + S +YLH G RIGV+ +G DE+ KD+A Sbjct: 122 EEYITSAVAKIGEKITLRRFTVLTKDDSSAFGAYLHMGGRIGVLTVLNGTTDEETAKDIA 181 Query: 179 MHIAAMKPVALSAEQVPADLIEKERSVAALKAAESGKPADIVAKMVDGSVQKFLKEVSLF 238 MH+AA+ P +S +QV + ER + +A + GKP +IVAKMV+G + KF +E+ L Sbjct: 182 MHVAAVNPRYISRDQVSEEETNHERQILTQQALQEGKPENIVAKMVEGRLNKFFEEICLL 241 Query: 239 NQAFVKNDKQSVEQMLKAANTTVKSFAMYVVGEGIEKKQDDFAAEVAAQV 288 +QAFVKN + V+Q++ A N TV++F Y VGEGIEK+Q++FA EV QV Sbjct: 242 DQAFVKNPDEKVKQVIAAKNATVQTFVRYEVGEGIEKRQENFAEEVMNQV 291